Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC21.99■■□□□ 1.11
SLC44A3Q8N4M1 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC21.99■■□□□ 1.11
SLC44A3Q8N4M1 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SLC44A3Q8N4M1 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SLC44A3Q8N4M1 LINC01960-201ENST00000563759 1884 ntBASIC21.99■■□□□ 1.11
SLC44A3Q8N4M1 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC21.99■■□□□ 1.11
SLC44A3Q8N4M1 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
SLC44A3Q8N4M1 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
SLC44A3Q8N4M1 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC21.99■■□□□ 1.11
SLC44A3Q8N4M1 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC21.99■■□□□ 1.11
SLC44A3Q8N4M1 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC21.99■■□□□ 1.11
SLC44A3Q8N4M1 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC21.99■■□□□ 1.11
SLC44A3Q8N4M1 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC21.99■■□□□ 1.11
SLC44A3Q8N4M1 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SLC44A3Q8N4M1 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
SLC44A3Q8N4M1 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SLC44A3Q8N4M1 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
SLC44A3Q8N4M1 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SLC44A3Q8N4M1 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
SLC44A3Q8N4M1 OR7E47P-201ENST00000546390 1422 ntBASIC21.98■■□□□ 1.11
SLC44A3Q8N4M1 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SLC44A3Q8N4M1 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SLC44A3Q8N4M1 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SLC44A3Q8N4M1 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC21.98■■□□□ 1.11
SLC44A3Q8N4M1 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC21.98■■□□□ 1.11
SLC44A3Q8N4M1 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC21.98■■□□□ 1.11
SLC44A3Q8N4M1 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC21.98■■□□□ 1.11
SLC44A3Q8N4M1 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC21.98■■□□□ 1.11
SLC44A3Q8N4M1 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC21.98■■□□□ 1.11
SLC44A3Q8N4M1 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
SLC44A3Q8N4M1 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
SLC44A3Q8N4M1 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SLC44A3Q8N4M1 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
SLC44A3Q8N4M1 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.98■■□□□ 1.11
SLC44A3Q8N4M1 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SLC44A3Q8N4M1 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
SLC44A3Q8N4M1 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
SLC44A3Q8N4M1 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SLC44A3Q8N4M1 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
SLC44A3Q8N4M1 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC21.97■■□□□ 1.11
SLC44A3Q8N4M1 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC21.97■■□□□ 1.11
SLC44A3Q8N4M1 AL034346.1-201ENST00000568244 1277 ntBASIC21.97■■□□□ 1.11
SLC44A3Q8N4M1 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC21.97■■□□□ 1.11
SLC44A3Q8N4M1 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
SLC44A3Q8N4M1 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
SLC44A3Q8N4M1 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.96■■□□□ 1.11
SLC44A3Q8N4M1 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC21.96■■□□□ 1.11
SLC44A3Q8N4M1 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SLC44A3Q8N4M1 AL158047.1-201ENST00000445918 881 ntBASIC21.96■■□□□ 1.11
SLC44A3Q8N4M1 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
SLC44A3Q8N4M1 BET1L-207ENST00000529614 560 ntTSL 5 BASIC21.96■■□□□ 1.11
SLC44A3Q8N4M1 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC21.96■■□□□ 1.11
SLC44A3Q8N4M1 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC21.96■■□□□ 1.11
SLC44A3Q8N4M1 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SLC44A3Q8N4M1 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
SLC44A3Q8N4M1 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.96■■□□□ 1.11
SLC44A3Q8N4M1 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SLC44A3Q8N4M1 PKM-204ENST00000449901 2526 ntTSL 2 BASIC21.95■■□□□ 1.1
SLC44A3Q8N4M1 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
SLC44A3Q8N4M1 GAS7-202ENST00000396115 929 ntTSL 5 BASIC21.95■■□□□ 1.1
SLC44A3Q8N4M1 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC21.95■■□□□ 1.1
SLC44A3Q8N4M1 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC21.95■■□□□ 1.1
SLC44A3Q8N4M1 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC21.95■■□□□ 1.1
SLC44A3Q8N4M1 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC21.95■■□□□ 1.1
SLC44A3Q8N4M1 AC091874.3-201ENST00000512672 1195 ntBASIC21.95■■□□□ 1.1
SLC44A3Q8N4M1 MMAB-206ENST00000540016 945 ntTSL 3 BASIC21.95■■□□□ 1.1
SLC44A3Q8N4M1 AC142381.4-202ENST00000563973 229 ntBASIC21.95■■□□□ 1.1
SLC44A3Q8N4M1 AC006058.3-201ENST00000606217 1069 ntBASIC21.95■■□□□ 1.1
SLC44A3Q8N4M1 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
SLC44A3Q8N4M1 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
SLC44A3Q8N4M1 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
SLC44A3Q8N4M1 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC21.95■■□□□ 1.1
SLC44A3Q8N4M1 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC21.95■■□□□ 1.1
SLC44A3Q8N4M1 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
SLC44A3Q8N4M1 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
SLC44A3Q8N4M1 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SLC44A3Q8N4M1 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SLC44A3Q8N4M1 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SLC44A3Q8N4M1 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SLC44A3Q8N4M1 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SLC44A3Q8N4M1 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SLC44A3Q8N4M1 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SLC44A3Q8N4M1 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC21.94■■□□□ 1.1
SLC44A3Q8N4M1 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC21.94■■□□□ 1.1
SLC44A3Q8N4M1 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SLC44A3Q8N4M1 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
SLC44A3Q8N4M1 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.94■■□□□ 1.1
SLC44A3Q8N4M1 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SLC44A3Q8N4M1 LINC00526-201ENST00000581067 1875 ntBASIC21.94■■□□□ 1.1
SLC44A3Q8N4M1 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SLC44A3Q8N4M1 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SLC44A3Q8N4M1 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SLC44A3Q8N4M1 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC21.93■■□□□ 1.1
SLC44A3Q8N4M1 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
SLC44A3Q8N4M1 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
SLC44A3Q8N4M1 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC21.93■■□□□ 1.1
SLC44A3Q8N4M1 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC21.93■■□□□ 1.1
SLC44A3Q8N4M1 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
SLC44A3Q8N4M1 AL596275.1-201ENST00000423464 877 ntBASIC21.93■■□□□ 1.1
SLC44A3Q8N4M1 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC21.93■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 12 ms