Protein–RNA interactions for Protein: Q5SRH9

TTC39A, Tetratricopeptide repeat protein 39A, humanhuman

Predictions only

Length 613 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC39AQ5SRH9 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC26.04■■□□□ 1.76
TTC39AQ5SRH9 AL137784.2-201ENST00000607332 1000 ntBASIC26.04■■□□□ 1.76
TTC39AQ5SRH9 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
TTC39AQ5SRH9 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
TTC39AQ5SRH9 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
TTC39AQ5SRH9 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
TTC39AQ5SRH9 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
TTC39AQ5SRH9 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
TTC39AQ5SRH9 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC26.03■■□□□ 1.76
TTC39AQ5SRH9 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC26.03■■□□□ 1.76
TTC39AQ5SRH9 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
TTC39AQ5SRH9 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC26.03■■□□□ 1.76
TTC39AQ5SRH9 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
TTC39AQ5SRH9 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
TTC39AQ5SRH9 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
TTC39AQ5SRH9 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC26.02■■□□□ 1.76
TTC39AQ5SRH9 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC26.02■■□□□ 1.76
TTC39AQ5SRH9 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC26.02■■□□□ 1.76
TTC39AQ5SRH9 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC26.01■■□□□ 1.75
TTC39AQ5SRH9 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
TTC39AQ5SRH9 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC26.01■■□□□ 1.75
TTC39AQ5SRH9 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC26.01■■□□□ 1.75
TTC39AQ5SRH9 AC016769.1-201ENST00000409132 1010 ntBASIC26.01■■□□□ 1.75
TTC39AQ5SRH9 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
TTC39AQ5SRH9 AC004911.1-201ENST00000416316 871 ntBASIC26.01■■□□□ 1.75
TTC39AQ5SRH9 SERP1-208ENST00000491660 830 ntTSL 2 BASIC26.01■■□□□ 1.75
TTC39AQ5SRH9 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC26.01■■□□□ 1.75
TTC39AQ5SRH9 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC26.01■■□□□ 1.75
TTC39AQ5SRH9 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
TTC39AQ5SRH9 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
TTC39AQ5SRH9 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC26.01■■□□□ 1.75
TTC39AQ5SRH9 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC26.01■■□□□ 1.75
TTC39AQ5SRH9 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
TTC39AQ5SRH9 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC26.01■■□□□ 1.75
TTC39AQ5SRH9 AC133561.1-201ENST00000568600 2415 ntBASIC26■■□□□ 1.75
TTC39AQ5SRH9 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC26■■□□□ 1.75
TTC39AQ5SRH9 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC26■■□□□ 1.75
TTC39AQ5SRH9 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC26■■□□□ 1.75
TTC39AQ5SRH9 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC26■■□□□ 1.75
TTC39AQ5SRH9 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC26■■□□□ 1.75
TTC39AQ5SRH9 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC26■■□□□ 1.75
TTC39AQ5SRH9 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC26■■□□□ 1.75
TTC39AQ5SRH9 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC26■■□□□ 1.75
TTC39AQ5SRH9 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
TTC39AQ5SRH9 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC26■■□□□ 1.75
TTC39AQ5SRH9 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC26■■□□□ 1.75
TTC39AQ5SRH9 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC26■■□□□ 1.75
TTC39AQ5SRH9 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC26■■□□□ 1.75
TTC39AQ5SRH9 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC26■■□□□ 1.75
TTC39AQ5SRH9 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC26■■□□□ 1.75
TTC39AQ5SRH9 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
TTC39AQ5SRH9 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC26■■□□□ 1.75
TTC39AQ5SRH9 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
TTC39AQ5SRH9 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
TTC39AQ5SRH9 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
TTC39AQ5SRH9 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
TTC39AQ5SRH9 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC25.99■■□□□ 1.75
TTC39AQ5SRH9 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC25.99■■□□□ 1.75
TTC39AQ5SRH9 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC25.99■■□□□ 1.75
TTC39AQ5SRH9 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC25.99■■□□□ 1.75
TTC39AQ5SRH9 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC25.99■■□□□ 1.75
TTC39AQ5SRH9 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
TTC39AQ5SRH9 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC25.99■■□□□ 1.75
TTC39AQ5SRH9 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
TTC39AQ5SRH9 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
TTC39AQ5SRH9 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC25.99■■□□□ 1.75
TTC39AQ5SRH9 AC026471.6-201ENST00000622954 1905 ntBASIC25.98■■□□□ 1.75
TTC39AQ5SRH9 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
TTC39AQ5SRH9 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC25.98■■□□□ 1.75
TTC39AQ5SRH9 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
TTC39AQ5SRH9 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC25.98■■□□□ 1.75
TTC39AQ5SRH9 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC25.98■■□□□ 1.75
TTC39AQ5SRH9 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC25.98■■□□□ 1.75
TTC39AQ5SRH9 FAM99A-202ENST00000538190 1989 ntBASIC25.98■■□□□ 1.75
TTC39AQ5SRH9 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC25.98■■□□□ 1.75
TTC39AQ5SRH9 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
TTC39AQ5SRH9 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC25.97■■□□□ 1.75
TTC39AQ5SRH9 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
TTC39AQ5SRH9 HSCB-202ENST00000398941 955 ntTSL 2 BASIC25.97■■□□□ 1.75
TTC39AQ5SRH9 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC25.97■■□□□ 1.75
TTC39AQ5SRH9 AC006015.1-201ENST00000429970 570 ntBASIC25.97■■□□□ 1.75
TTC39AQ5SRH9 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC25.97■■□□□ 1.75
TTC39AQ5SRH9 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC25.97■■□□□ 1.75
TTC39AQ5SRH9 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC25.97■■□□□ 1.75
TTC39AQ5SRH9 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
TTC39AQ5SRH9 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
TTC39AQ5SRH9 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
TTC39AQ5SRH9 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC25.97■■□□□ 1.75
TTC39AQ5SRH9 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC25.96■■□□□ 1.75
TTC39AQ5SRH9 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC25.96■■□□□ 1.75
TTC39AQ5SRH9 EEF1DP3-203ENST00000566025 782 ntBASIC25.96■■□□□ 1.75
TTC39AQ5SRH9 AP001160.3-201ENST00000601484 763 ntBASIC25.96■■□□□ 1.75
TTC39AQ5SRH9 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC25.96■■□□□ 1.75
TTC39AQ5SRH9 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
TTC39AQ5SRH9 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
TTC39AQ5SRH9 AC003102.1-202ENST00000563394 1796 ntBASIC25.95■■□□□ 1.75
TTC39AQ5SRH9 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
TTC39AQ5SRH9 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC25.95■■□□□ 1.74
TTC39AQ5SRH9 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
TTC39AQ5SRH9 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC25.95■■□□□ 1.74
Retrieved 100 of 98,524 protein–RNA pairs in 146.3 ms