Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 TMEM191A-211ENST00000637163 1067 ntBASIC17.59■□□□□ 0.41
PDLIM3Q53GG5 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC17.59■□□□□ 0.41
PDLIM3Q53GG5 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PDLIM3Q53GG5 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC17.59■□□□□ 0.41
PDLIM3Q53GG5 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PDLIM3Q53GG5 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
PDLIM3Q53GG5 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PDLIM3Q53GG5 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC17.58■□□□□ 0.41
PDLIM3Q53GG5 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PDLIM3Q53GG5 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PDLIM3Q53GG5 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
PDLIM3Q53GG5 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
PDLIM3Q53GG5 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PDLIM3Q53GG5 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC17.58■□□□□ 0.41
PDLIM3Q53GG5 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
PDLIM3Q53GG5 AC138932.1-201ENST00000534164 6830 ntBASIC17.58■□□□□ 0.4
PDLIM3Q53GG5 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
PDLIM3Q53GG5 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PDLIM3Q53GG5 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC17.58■□□□□ 0.4
PDLIM3Q53GG5 RHOF-204ENST00000537265 699 ntTSL 2 BASIC17.58■□□□□ 0.4
PDLIM3Q53GG5 MIR4767-201ENST00000582827 78 ntBASIC17.58■□□□□ 0.4
PDLIM3Q53GG5 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PDLIM3Q53GG5 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PDLIM3Q53GG5 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
PDLIM3Q53GG5 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PDLIM3Q53GG5 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC17.58■□□□□ 0.4
PDLIM3Q53GG5 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PDLIM3Q53GG5 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PDLIM3Q53GG5 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC17.57■□□□□ 0.4
PDLIM3Q53GG5 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
PDLIM3Q53GG5 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
PDLIM3Q53GG5 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC17.57■□□□□ 0.4
PDLIM3Q53GG5 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PDLIM3Q53GG5 AL137060.1-201ENST00000618151 2648 ntBASIC17.57■□□□□ 0.4
PDLIM3Q53GG5 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
PDLIM3Q53GG5 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC17.57■□□□□ 0.4
PDLIM3Q53GG5 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC17.57■□□□□ 0.4
PDLIM3Q53GG5 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
PDLIM3Q53GG5 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
PDLIM3Q53GG5 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PDLIM3Q53GG5 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC17.57■□□□□ 0.4
PDLIM3Q53GG5 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PDLIM3Q53GG5 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC17.57■□□□□ 0.4
PDLIM3Q53GG5 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PDLIM3Q53GG5 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PDLIM3Q53GG5 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PDLIM3Q53GG5 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PDLIM3Q53GG5 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PDLIM3Q53GG5 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PDLIM3Q53GG5 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PDLIM3Q53GG5 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC17.56■□□□□ 0.4
PDLIM3Q53GG5 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
PDLIM3Q53GG5 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
PDLIM3Q53GG5 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
PDLIM3Q53GG5 VPS53-216ENST00000574029 585 ntTSL 4 BASIC17.56■□□□□ 0.4
PDLIM3Q53GG5 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC17.56■□□□□ 0.4
PDLIM3Q53GG5 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC17.56■□□□□ 0.4
PDLIM3Q53GG5 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC17.56■□□□□ 0.4
PDLIM3Q53GG5 AC066615.1-201ENST00000640911 628 ntBASIC17.56■□□□□ 0.4
PDLIM3Q53GG5 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PDLIM3Q53GG5 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.56■□□□□ 0.4
PDLIM3Q53GG5 GATM-206ENST00000558336 1522 ntTSL 2 BASIC17.56■□□□□ 0.4
PDLIM3Q53GG5 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
PDLIM3Q53GG5 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PDLIM3Q53GG5 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC17.55■□□□□ 0.4
PDLIM3Q53GG5 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PDLIM3Q53GG5 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
PDLIM3Q53GG5 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
PDLIM3Q53GG5 AK1-201ENST00000223836 736 ntTSL 3 BASIC17.55■□□□□ 0.4
PDLIM3Q53GG5 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PDLIM3Q53GG5 HACD1-201ENST00000326961 773 ntTSL 2 BASIC17.55■□□□□ 0.4
PDLIM3Q53GG5 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PDLIM3Q53GG5 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PDLIM3Q53GG5 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC17.55■□□□□ 0.4
PDLIM3Q53GG5 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC17.55■□□□□ 0.4
PDLIM3Q53GG5 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PDLIM3Q53GG5 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PDLIM3Q53GG5 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PDLIM3Q53GG5 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PDLIM3Q53GG5 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC17.54■□□□□ 0.4
PDLIM3Q53GG5 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC17.54■□□□□ 0.4
PDLIM3Q53GG5 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
PDLIM3Q53GG5 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC17.54■□□□□ 0.4
PDLIM3Q53GG5 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC17.54■□□□□ 0.4
PDLIM3Q53GG5 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC17.54■□□□□ 0.4
PDLIM3Q53GG5 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PDLIM3Q53GG5 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PDLIM3Q53GG5 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC17.54■□□□□ 0.4
PDLIM3Q53GG5 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC17.54■□□□□ 0.4
PDLIM3Q53GG5 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC17.54■□□□□ 0.4
PDLIM3Q53GG5 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PDLIM3Q53GG5 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PDLIM3Q53GG5 AC010542.4-201ENST00000563151 1910 ntBASIC17.54■□□□□ 0.4
PDLIM3Q53GG5 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PDLIM3Q53GG5 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PDLIM3Q53GG5 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PDLIM3Q53GG5 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
PDLIM3Q53GG5 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
PDLIM3Q53GG5 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PDLIM3Q53GG5 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms