Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
CCDC88AQ3V6T2 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC26.38■■□□□ 1.81
CCDC88AQ3V6T2 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC26.38■■□□□ 1.81
CCDC88AQ3V6T2 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC26.38■■□□□ 1.81
CCDC88AQ3V6T2 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
CCDC88AQ3V6T2 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC26.38■■□□□ 1.81
CCDC88AQ3V6T2 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
CCDC88AQ3V6T2 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC26.37■■□□□ 1.81
CCDC88AQ3V6T2 AC093787.1-201ENST00000450396 207 ntBASIC26.37■■□□□ 1.81
CCDC88AQ3V6T2 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC26.37■■□□□ 1.81
CCDC88AQ3V6T2 AC091874.3-201ENST00000512672 1195 ntBASIC26.37■■□□□ 1.81
CCDC88AQ3V6T2 RHOD-202ENST00000532559 538 ntTSL 3 BASIC26.37■■□□□ 1.81
CCDC88AQ3V6T2 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC26.37■■□□□ 1.81
CCDC88AQ3V6T2 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
CCDC88AQ3V6T2 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC26.36■■□□□ 1.81
CCDC88AQ3V6T2 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC26.36■■□□□ 1.81
CCDC88AQ3V6T2 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CCDC88AQ3V6T2 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CCDC88AQ3V6T2 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC26.36■■□□□ 1.81
CCDC88AQ3V6T2 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC26.36■■□□□ 1.81
CCDC88AQ3V6T2 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CCDC88AQ3V6T2 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
CCDC88AQ3V6T2 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CCDC88AQ3V6T2 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC26.36■■□□□ 1.81
CCDC88AQ3V6T2 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CCDC88AQ3V6T2 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC26.36■■□□□ 1.81
CCDC88AQ3V6T2 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC26.36■■□□□ 1.81
CCDC88AQ3V6T2 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC26.36■■□□□ 1.81
CCDC88AQ3V6T2 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC26.36■■□□□ 1.81
CCDC88AQ3V6T2 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC26.36■■□□□ 1.81
CCDC88AQ3V6T2 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC26.36■■□□□ 1.81
CCDC88AQ3V6T2 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC26.35■■□□□ 1.81
CCDC88AQ3V6T2 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
CCDC88AQ3V6T2 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
CCDC88AQ3V6T2 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC26.35■■□□□ 1.81
CCDC88AQ3V6T2 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC26.35■■□□□ 1.81
CCDC88AQ3V6T2 AL512625.2-201ENST00000417533 625 ntBASIC26.34■■□□□ 1.81
CCDC88AQ3V6T2 RPS2P4-201ENST00000476944 856 ntBASIC26.34■■□□□ 1.81
CCDC88AQ3V6T2 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC26.34■■□□□ 1.81
CCDC88AQ3V6T2 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CCDC88AQ3V6T2 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC26.34■■□□□ 1.81
CCDC88AQ3V6T2 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
CCDC88AQ3V6T2 MMAB-206ENST00000540016 945 ntTSL 3 BASIC26.34■■□□□ 1.81
CCDC88AQ3V6T2 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
CCDC88AQ3V6T2 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CCDC88AQ3V6T2 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC26.33■■□□□ 1.81
CCDC88AQ3V6T2 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC26.33■■□□□ 1.81
CCDC88AQ3V6T2 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC26.33■■□□□ 1.81
CCDC88AQ3V6T2 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC26.33■■□□□ 1.81
CCDC88AQ3V6T2 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
CCDC88AQ3V6T2 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC26.33■■□□□ 1.81
CCDC88AQ3V6T2 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
CCDC88AQ3V6T2 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC26.33■■□□□ 1.81
CCDC88AQ3V6T2 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
CCDC88AQ3V6T2 ESRRAP1-201ENST00000400596 1257 ntBASIC26.33■■□□□ 1.81
CCDC88AQ3V6T2 ISCU-212ENST00000547005 795 ntTSL 3 BASIC26.33■■□□□ 1.81
CCDC88AQ3V6T2 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC26.33■■□□□ 1.81
CCDC88AQ3V6T2 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC26.33■■□□□ 1.81
CCDC88AQ3V6T2 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC26.33■■□□□ 1.81
CCDC88AQ3V6T2 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
CCDC88AQ3V6T2 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC26.33■■□□□ 1.81
CCDC88AQ3V6T2 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC26.33■■□□□ 1.81
CCDC88AQ3V6T2 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC26.33■■□□□ 1.8
CCDC88AQ3V6T2 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC26.32■■□□□ 1.8
CCDC88AQ3V6T2 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC26.32■■□□□ 1.8
CCDC88AQ3V6T2 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC26.32■■□□□ 1.8
CCDC88AQ3V6T2 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC26.32■■□□□ 1.8
CCDC88AQ3V6T2 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC26.32■■□□□ 1.8
CCDC88AQ3V6T2 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC26.32■■□□□ 1.8
CCDC88AQ3V6T2 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
CCDC88AQ3V6T2 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CCDC88AQ3V6T2 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC26.32■■□□□ 1.8
CCDC88AQ3V6T2 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CCDC88AQ3V6T2 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
CCDC88AQ3V6T2 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CCDC88AQ3V6T2 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC26.32■■□□□ 1.8
CCDC88AQ3V6T2 NAA20-201ENST00000310450 920 ntTSL 2 BASIC26.32■■□□□ 1.8
CCDC88AQ3V6T2 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC26.32■■□□□ 1.8
CCDC88AQ3V6T2 AC097658.1-201ENST00000475555 843 ntBASIC26.32■■□□□ 1.8
CCDC88AQ3V6T2 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC26.32■■□□□ 1.8
CCDC88AQ3V6T2 AP003097.1-201ENST00000530657 1135 ntBASIC26.32■■□□□ 1.8
CCDC88AQ3V6T2 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
CCDC88AQ3V6T2 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC26.32■■□□□ 1.8
CCDC88AQ3V6T2 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC26.32■■□□□ 1.8
CCDC88AQ3V6T2 USP45-205ENST00000472914 1617 ntTSL 5 BASIC26.31■■□□□ 1.8
CCDC88AQ3V6T2 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC26.31■■□□□ 1.8
CCDC88AQ3V6T2 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
CCDC88AQ3V6T2 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CCDC88AQ3V6T2 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CCDC88AQ3V6T2 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CCDC88AQ3V6T2 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CCDC88AQ3V6T2 TERF1P5-201ENST00000477545 1207 ntBASIC26.3■■□□□ 1.8
CCDC88AQ3V6T2 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC26.3■■□□□ 1.8
CCDC88AQ3V6T2 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC26.3■■□□□ 1.8
CCDC88AQ3V6T2 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
CCDC88AQ3V6T2 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
CCDC88AQ3V6T2 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC26.3■■□□□ 1.8
CCDC88AQ3V6T2 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC26.3■■□□□ 1.8
CCDC88AQ3V6T2 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CCDC88AQ3V6T2 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC26.3■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms