Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.86■□□□□ 0.93
PTCHD3Q3KNS1 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.86■□□□□ 0.93
PTCHD3Q3KNS1 SMUG1P1-201ENST00000590640 811 ntBASIC20.86■□□□□ 0.93
PTCHD3Q3KNS1 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.86■□□□□ 0.93
PTCHD3Q3KNS1 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PTCHD3Q3KNS1 AP004607.7-201ENST00000527152 1677 ntBASIC20.86■□□□□ 0.93
PTCHD3Q3KNS1 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PTCHD3Q3KNS1 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.85■□□□□ 0.93
PTCHD3Q3KNS1 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.85■□□□□ 0.93
PTCHD3Q3KNS1 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PTCHD3Q3KNS1 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.85■□□□□ 0.93
PTCHD3Q3KNS1 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PTCHD3Q3KNS1 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PTCHD3Q3KNS1 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
PTCHD3Q3KNS1 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
PTCHD3Q3KNS1 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.85■□□□□ 0.93
PTCHD3Q3KNS1 HACD1-201ENST00000326961 773 ntTSL 2 BASIC20.85■□□□□ 0.93
PTCHD3Q3KNS1 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.85■□□□□ 0.93
PTCHD3Q3KNS1 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.85■□□□□ 0.93
PTCHD3Q3KNS1 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
PTCHD3Q3KNS1 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PTCHD3Q3KNS1 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.85■□□□□ 0.93
PTCHD3Q3KNS1 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PTCHD3Q3KNS1 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.85■□□□□ 0.93
PTCHD3Q3KNS1 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
PTCHD3Q3KNS1 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PTCHD3Q3KNS1 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PTCHD3Q3KNS1 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
PTCHD3Q3KNS1 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PTCHD3Q3KNS1 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.84■□□□□ 0.93
PTCHD3Q3KNS1 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
PTCHD3Q3KNS1 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
PTCHD3Q3KNS1 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PTCHD3Q3KNS1 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20.84■□□□□ 0.93
PTCHD3Q3KNS1 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.84■□□□□ 0.93
PTCHD3Q3KNS1 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.84■□□□□ 0.93
PTCHD3Q3KNS1 AL354811.1-201ENST00000610286 706 ntBASIC20.84■□□□□ 0.93
PTCHD3Q3KNS1 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PTCHD3Q3KNS1 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
PTCHD3Q3KNS1 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.84■□□□□ 0.93
PTCHD3Q3KNS1 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
PTCHD3Q3KNS1 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
PTCHD3Q3KNS1 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC20.83■□□□□ 0.93
PTCHD3Q3KNS1 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PTCHD3Q3KNS1 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PTCHD3Q3KNS1 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
PTCHD3Q3KNS1 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.83■□□□□ 0.93
PTCHD3Q3KNS1 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PTCHD3Q3KNS1 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.83■□□□□ 0.93
PTCHD3Q3KNS1 AC027612.3-201ENST00000413684 1047 ntBASIC20.83■□□□□ 0.93
PTCHD3Q3KNS1 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PTCHD3Q3KNS1 AL034346.1-201ENST00000568244 1277 ntBASIC20.83■□□□□ 0.93
PTCHD3Q3KNS1 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
PTCHD3Q3KNS1 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.83■□□□□ 0.92
PTCHD3Q3KNS1 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
PTCHD3Q3KNS1 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PTCHD3Q3KNS1 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PTCHD3Q3KNS1 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PTCHD3Q3KNS1 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PTCHD3Q3KNS1 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
PTCHD3Q3KNS1 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PTCHD3Q3KNS1 AC034268.1-201ENST00000441047 882 ntBASIC20.82■□□□□ 0.92
PTCHD3Q3KNS1 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.82■□□□□ 0.92
PTCHD3Q3KNS1 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.82■□□□□ 0.92
PTCHD3Q3KNS1 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PTCHD3Q3KNS1 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
PTCHD3Q3KNS1 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.82■□□□□ 0.92
PTCHD3Q3KNS1 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
PTCHD3Q3KNS1 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.82■□□□□ 0.92
PTCHD3Q3KNS1 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PTCHD3Q3KNS1 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PTCHD3Q3KNS1 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PTCHD3Q3KNS1 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PTCHD3Q3KNS1 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.81■□□□□ 0.92
PTCHD3Q3KNS1 AC105233.4-201ENST00000642045 216 ntBASIC20.81■□□□□ 0.92
PTCHD3Q3KNS1 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PTCHD3Q3KNS1 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PTCHD3Q3KNS1 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
PTCHD3Q3KNS1 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PTCHD3Q3KNS1 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
PTCHD3Q3KNS1 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
PTCHD3Q3KNS1 GLI3-203ENST00000437480 451 ntTSL 2 BASIC20.8■□□□□ 0.92
PTCHD3Q3KNS1 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC20.8■□□□□ 0.92
PTCHD3Q3KNS1 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC20.8■□□□□ 0.92
PTCHD3Q3KNS1 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.8■□□□□ 0.92
PTCHD3Q3KNS1 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC20.8■□□□□ 0.92
PTCHD3Q3KNS1 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PTCHD3Q3KNS1 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
PTCHD3Q3KNS1 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PTCHD3Q3KNS1 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.8■□□□□ 0.92
PTCHD3Q3KNS1 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PTCHD3Q3KNS1 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.8■□□□□ 0.92
PTCHD3Q3KNS1 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PTCHD3Q3KNS1 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PTCHD3Q3KNS1 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PTCHD3Q3KNS1 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PTCHD3Q3KNS1 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
PTCHD3Q3KNS1 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PTCHD3Q3KNS1 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.79■□□□□ 0.92
PTCHD3Q3KNS1 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms