Protein–RNA interactions for Protein: P56159

GFRA1, GDNF family receptor alpha-1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA1P56159 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC19.19■□□□□ 0.66
GFRA1P56159 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
GFRA1P56159 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
GFRA1P56159 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
GFRA1P56159 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
GFRA1P56159 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC19.19■□□□□ 0.66
GFRA1P56159 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
GFRA1P56159 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
GFRA1P56159 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
GFRA1P56159 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC19.18■□□□□ 0.66
GFRA1P56159 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
GFRA1P56159 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
GFRA1P56159 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC19.18■□□□□ 0.66
GFRA1P56159 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
GFRA1P56159 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.18■□□□□ 0.66
GFRA1P56159 AC016769.1-201ENST00000409132 1010 ntBASIC19.18■□□□□ 0.66
GFRA1P56159 AC138907.5-202ENST00000569484 235 ntBASIC19.18■□□□□ 0.66
GFRA1P56159 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.18■□□□□ 0.66
GFRA1P56159 AC053503.5-201ENST00000601508 636 ntBASIC19.18■□□□□ 0.66
GFRA1P56159 WWOX-218ENST00000627394 894 ntTSL 5 BASIC19.18■□□□□ 0.66
GFRA1P56159 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC19.18■□□□□ 0.66
GFRA1P56159 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
GFRA1P56159 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
GFRA1P56159 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.17■□□□□ 0.66
GFRA1P56159 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
GFRA1P56159 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
GFRA1P56159 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
GFRA1P56159 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
GFRA1P56159 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
GFRA1P56159 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.17■□□□□ 0.66
GFRA1P56159 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
GFRA1P56159 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.17■□□□□ 0.66
GFRA1P56159 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.17■□□□□ 0.66
GFRA1P56159 AP001160.3-201ENST00000601484 763 ntBASIC19.17■□□□□ 0.66
GFRA1P56159 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.17■□□□□ 0.66
GFRA1P56159 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
GFRA1P56159 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
GFRA1P56159 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC19.17■□□□□ 0.66
GFRA1P56159 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
GFRA1P56159 AC003102.1-202ENST00000563394 1796 ntBASIC19.16■□□□□ 0.66
GFRA1P56159 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
GFRA1P56159 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC19.16■□□□□ 0.66
GFRA1P56159 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
GFRA1P56159 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC19.16■□□□□ 0.66
GFRA1P56159 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
GFRA1P56159 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
GFRA1P56159 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
GFRA1P56159 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
GFRA1P56159 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
GFRA1P56159 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
GFRA1P56159 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
GFRA1P56159 DLX3-202ENST00000512495 834 ntTSL 2 BASIC19.16■□□□□ 0.66
GFRA1P56159 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC19.16■□□□□ 0.66
GFRA1P56159 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
GFRA1P56159 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
GFRA1P56159 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
GFRA1P56159 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
GFRA1P56159 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC19.16■□□□□ 0.66
GFRA1P56159 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.16■□□□□ 0.66
GFRA1P56159 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
GFRA1P56159 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
GFRA1P56159 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
GFRA1P56159 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
GFRA1P56159 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
GFRA1P56159 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
GFRA1P56159 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.15■□□□□ 0.66
GFRA1P56159 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
GFRA1P56159 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
GFRA1P56159 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
GFRA1P56159 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
GFRA1P56159 KRT18P11-201ENST00000435214 1283 ntBASIC19.15■□□□□ 0.66
GFRA1P56159 AC010141.2-201ENST00000452426 721 ntBASIC19.15■□□□□ 0.66
GFRA1P56159 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC19.15■□□□□ 0.66
GFRA1P56159 VPS53-216ENST00000574029 585 ntTSL 4 BASIC19.15■□□□□ 0.66
GFRA1P56159 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
GFRA1P56159 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
GFRA1P56159 FAM99A-202ENST00000538190 1989 ntBASIC19.15■□□□□ 0.66
GFRA1P56159 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
GFRA1P56159 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
GFRA1P56159 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
GFRA1P56159 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.66
GFRA1P56159 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
GFRA1P56159 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
GFRA1P56159 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC19.14■□□□□ 0.65
GFRA1P56159 AC026471.6-201ENST00000622954 1905 ntBASIC19.14■□□□□ 0.65
GFRA1P56159 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
GFRA1P56159 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
GFRA1P56159 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
GFRA1P56159 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.14■□□□□ 0.65
GFRA1P56159 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.14■□□□□ 0.65
GFRA1P56159 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC19.14■□□□□ 0.65
GFRA1P56159 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.14■□□□□ 0.65
GFRA1P56159 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.14■□□□□ 0.65
GFRA1P56159 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC19.14■□□□□ 0.65
GFRA1P56159 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.14■□□□□ 0.65
GFRA1P56159 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.14■□□□□ 0.65
GFRA1P56159 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
GFRA1P56159 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
GFRA1P56159 RARRES2P11-201ENST00000635158 484 ntBASIC19.14■□□□□ 0.65
GFRA1P56159 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms