Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MSX2P35548 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.32■□□□□ 0.84
MSX2P35548 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
MSX2P35548 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
MSX2P35548 MIR6722-201ENST00000617286 78 ntBASIC20.32■□□□□ 0.84
MSX2P35548 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
MSX2P35548 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MSX2P35548 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.31■□□□□ 0.84
MSX2P35548 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSX2P35548 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSX2P35548 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSX2P35548 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.31■□□□□ 0.84
MSX2P35548 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
MSX2P35548 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
MSX2P35548 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSX2P35548 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
MSX2P35548 MIR4508-201ENST00000584178 70 ntBASIC20.31■□□□□ 0.84
MSX2P35548 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.31■□□□□ 0.84
MSX2P35548 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
MSX2P35548 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSX2P35548 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSX2P35548 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSX2P35548 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.31■□□□□ 0.84
MSX2P35548 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
MSX2P35548 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
MSX2P35548 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.3■□□□□ 0.84
MSX2P35548 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MSX2P35548 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MSX2P35548 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MSX2P35548 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MSX2P35548 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
MSX2P35548 AC103834.1-201ENST00000520383 144 ntBASIC20.3■□□□□ 0.84
MSX2P35548 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.3■□□□□ 0.84
MSX2P35548 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MSX2P35548 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC20.3■□□□□ 0.84
MSX2P35548 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.3■□□□□ 0.84
MSX2P35548 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
MSX2P35548 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MSX2P35548 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
MSX2P35548 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
MSX2P35548 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
MSX2P35548 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSX2P35548 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
MSX2P35548 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSX2P35548 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSX2P35548 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
MSX2P35548 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSX2P35548 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.29■□□□□ 0.84
MSX2P35548 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.29■□□□□ 0.84
MSX2P35548 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSX2P35548 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSX2P35548 AC137630.3-201ENST00000607245 391 ntBASIC20.29■□□□□ 0.84
MSX2P35548 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSX2P35548 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MSX2P35548 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.29■□□□□ 0.84
MSX2P35548 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSX2P35548 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
MSX2P35548 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MSX2P35548 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSX2P35548 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSX2P35548 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.29■□□□□ 0.84
MSX2P35548 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MSX2P35548 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
MSX2P35548 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSX2P35548 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.28■□□□□ 0.84
MSX2P35548 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSX2P35548 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.28■□□□□ 0.84
MSX2P35548 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
MSX2P35548 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.28■□□□□ 0.84
MSX2P35548 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
MSX2P35548 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSX2P35548 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
MSX2P35548 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSX2P35548 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.27■□□□□ 0.84
MSX2P35548 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.27■□□□□ 0.84
MSX2P35548 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSX2P35548 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.27■□□□□ 0.84
MSX2P35548 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.27■□□□□ 0.84
MSX2P35548 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSX2P35548 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSX2P35548 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSX2P35548 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
MSX2P35548 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
MSX2P35548 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC20.27■□□□□ 0.84
MSX2P35548 AC103724.3-201ENST00000564481 992 ntBASIC20.27■□□□□ 0.84
MSX2P35548 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
MSX2P35548 ABHD17AP5-201ENST00000580133 923 ntBASIC20.27■□□□□ 0.84
MSX2P35548 AC104564.3-201ENST00000582367 638 ntBASIC20.27■□□□□ 0.84
MSX2P35548 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSX2P35548 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
MSX2P35548 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.83
MSX2P35548 C17orf82-201ENST00000623772 1530 ntBASIC20.27■□□□□ 0.83
MSX2P35548 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC20.27■□□□□ 0.83
MSX2P35548 KRT8P33-201ENST00000508125 1423 ntBASIC20.27■□□□□ 0.83
MSX2P35548 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSX2P35548 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.26■□□□□ 0.83
MSX2P35548 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
MSX2P35548 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSX2P35548 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSX2P35548 AFG3L1P-217ENST00000557444 2447 ntBASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms