Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC22.88■■□□□ 1.25
RNF40O75150 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC22.88■■□□□ 1.25
RNF40O75150 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC22.88■■□□□ 1.25
RNF40O75150 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC22.88■■□□□ 1.25
RNF40O75150 FAM99A-202ENST00000538190 1989 ntBASIC22.88■■□□□ 1.25
RNF40O75150 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC22.88■■□□□ 1.25
RNF40O75150 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC22.88■■□□□ 1.25
RNF40O75150 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
RNF40O75150 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC22.88■■□□□ 1.25
RNF40O75150 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
RNF40O75150 EI24-204ENST00000527235 1625 ntTSL 5 BASIC22.87■■□□□ 1.25
RNF40O75150 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
RNF40O75150 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC22.87■■□□□ 1.25
RNF40O75150 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC22.87■■□□□ 1.25
RNF40O75150 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
RNF40O75150 AC090192.1-201ENST00000517740 490 ntBASIC22.87■■□□□ 1.25
RNF40O75150 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC22.87■■□□□ 1.25
RNF40O75150 RARRES2P11-201ENST00000635158 484 ntBASIC22.87■■□□□ 1.25
RNF40O75150 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC22.87■■□□□ 1.25
RNF40O75150 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC22.87■■□□□ 1.25
RNF40O75150 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC22.87■■□□□ 1.25
RNF40O75150 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
RNF40O75150 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
RNF40O75150 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC22.86■■□□□ 1.25
RNF40O75150 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
RNF40O75150 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
RNF40O75150 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC22.86■■□□□ 1.25
RNF40O75150 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC22.86■■□□□ 1.25
RNF40O75150 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
RNF40O75150 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC22.86■■□□□ 1.25
RNF40O75150 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC22.86■■□□□ 1.25
RNF40O75150 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
RNF40O75150 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC22.86■■□□□ 1.25
RNF40O75150 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC22.86■■□□□ 1.25
RNF40O75150 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC22.86■■□□□ 1.25
RNF40O75150 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC22.86■■□□□ 1.25
RNF40O75150 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
RNF40O75150 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
RNF40O75150 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
RNF40O75150 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC22.86■■□□□ 1.25
RNF40O75150 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
RNF40O75150 DUX4L2-201ENST00000561772 1275 ntBASIC22.86■■□□□ 1.25
RNF40O75150 RAB43-208ENST00000615093 783 ntTSL 5 BASIC22.86■■□□□ 1.25
RNF40O75150 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC22.86■■□□□ 1.25
RNF40O75150 DUX4L6-201ENST00000626483 1275 ntBASIC22.86■■□□□ 1.25
RNF40O75150 DUX4L1-201ENST00000627662 1275 ntBASIC22.86■■□□□ 1.25
RNF40O75150 DUX4L8-201ENST00000629013 1275 ntBASIC22.86■■□□□ 1.25
RNF40O75150 DUX4L3-201ENST00000630187 1275 ntBASIC22.86■■□□□ 1.25
RNF40O75150 DUX4L7-201ENST00000630678 1275 ntBASIC22.86■■□□□ 1.25
RNF40O75150 DUX4L5-201ENST00000630834 1275 ntBASIC22.86■■□□□ 1.25
RNF40O75150 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC22.86■■□□□ 1.25
RNF40O75150 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC22.86■■□□□ 1.25
RNF40O75150 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
RNF40O75150 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
RNF40O75150 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
RNF40O75150 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC22.86■■□□□ 1.25
RNF40O75150 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
RNF40O75150 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC22.85■■□□□ 1.25
RNF40O75150 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
RNF40O75150 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
RNF40O75150 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
RNF40O75150 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
RNF40O75150 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC22.85■■□□□ 1.25
RNF40O75150 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
RNF40O75150 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC22.85■■□□□ 1.25
RNF40O75150 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC22.85■■□□□ 1.25
RNF40O75150 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC22.85■■□□□ 1.25
RNF40O75150 IGHV3-19-201ENST00000521488 291 ntBASIC22.85■■□□□ 1.25
RNF40O75150 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC22.85■■□□□ 1.25
RNF40O75150 AL358852.1-201ENST00000623174 1268 ntBASIC22.85■■□□□ 1.25
RNF40O75150 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
RNF40O75150 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
RNF40O75150 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
RNF40O75150 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
RNF40O75150 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC22.85■■□□□ 1.25
RNF40O75150 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
RNF40O75150 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC22.85■■□□□ 1.25
RNF40O75150 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
RNF40O75150 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
RNF40O75150 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC22.84■■□□□ 1.25
RNF40O75150 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC22.84■■□□□ 1.25
RNF40O75150 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
RNF40O75150 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC22.84■■□□□ 1.25
RNF40O75150 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC22.84■■□□□ 1.25
RNF40O75150 MIR6084-201ENST00000622012 110 ntBASIC22.84■■□□□ 1.25
RNF40O75150 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
RNF40O75150 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC22.83■■□□□ 1.25
RNF40O75150 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC22.83■■□□□ 1.25
RNF40O75150 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
RNF40O75150 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC22.83■■□□□ 1.25
RNF40O75150 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC22.83■■□□□ 1.25
RNF40O75150 AC027612.3-201ENST00000413684 1047 ntBASIC22.83■■□□□ 1.25
RNF40O75150 AL137784.2-201ENST00000607332 1000 ntBASIC22.83■■□□□ 1.25
RNF40O75150 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
RNF40O75150 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC22.83■■□□□ 1.24
RNF40O75150 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
RNF40O75150 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC22.83■■□□□ 1.24
RNF40O75150 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
RNF40O75150 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC22.82■■□□□ 1.24
RNF40O75150 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC22.82■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms