Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SGCEO43556 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SGCEO43556 FBXW4P1-201ENST00000426721 2239 ntBASIC18.81■□□□□ 0.6
SGCEO43556 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SGCEO43556 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SGCEO43556 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC18.81■□□□□ 0.6
SGCEO43556 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
SGCEO43556 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SGCEO43556 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC18.81■□□□□ 0.6
SGCEO43556 AL034346.1-201ENST00000568244 1277 ntBASIC18.81■□□□□ 0.6
SGCEO43556 MAG-206ENST00000597035 542 ntTSL 4 BASIC18.81■□□□□ 0.6
SGCEO43556 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
SGCEO43556 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SGCEO43556 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SGCEO43556 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
SGCEO43556 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC18.81■□□□□ 0.6
SGCEO43556 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
SGCEO43556 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC18.81■□□□□ 0.6
SGCEO43556 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC18.81■□□□□ 0.6
SGCEO43556 RASA4CP-201ENST00000424092 1398 ntBASIC18.81■□□□□ 0.6
SGCEO43556 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SGCEO43556 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SGCEO43556 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SGCEO43556 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SGCEO43556 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC18.8■□□□□ 0.6
SGCEO43556 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SGCEO43556 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC18.8■□□□□ 0.6
SGCEO43556 MIR939-201ENST00000401314 82 ntBASIC18.8■□□□□ 0.6
SGCEO43556 AC091305.1-201ENST00000479476 895 ntBASIC18.8■□□□□ 0.6
SGCEO43556 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC18.8■□□□□ 0.6
SGCEO43556 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SGCEO43556 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
SGCEO43556 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC18.8■□□□□ 0.6
SGCEO43556 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
SGCEO43556 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SGCEO43556 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SGCEO43556 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SGCEO43556 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SGCEO43556 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SGCEO43556 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC18.79■□□□□ 0.6
SGCEO43556 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SGCEO43556 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
SGCEO43556 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SGCEO43556 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SGCEO43556 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
SGCEO43556 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
SGCEO43556 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC18.79■□□□□ 0.6
SGCEO43556 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SGCEO43556 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
SGCEO43556 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SGCEO43556 TSPY26P-201ENST00000476365 1326 ntBASIC18.78■□□□□ 0.6
SGCEO43556 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SGCEO43556 WWC2-AS2-201ENST00000578387 2183 ntBASIC18.78■□□□□ 0.6
SGCEO43556 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SGCEO43556 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SGCEO43556 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC18.78■□□□□ 0.6
SGCEO43556 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC18.78■□□□□ 0.6
SGCEO43556 AL031432.3-201ENST00000607698 485 ntBASIC18.78■□□□□ 0.6
SGCEO43556 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SGCEO43556 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC18.78■□□□□ 0.6
SGCEO43556 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SGCEO43556 AP004607.7-201ENST00000527152 1677 ntBASIC18.78■□□□□ 0.6
SGCEO43556 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SGCEO43556 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
SGCEO43556 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SGCEO43556 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC18.78■□□□□ 0.6
SGCEO43556 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SGCEO43556 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SGCEO43556 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC18.77■□□□□ 0.6
SGCEO43556 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
SGCEO43556 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SGCEO43556 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC18.77■□□□□ 0.6
SGCEO43556 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SGCEO43556 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
SGCEO43556 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC18.77■□□□□ 0.6
SGCEO43556 AL136967.2-201ENST00000623968 743 ntBASIC18.77■□□□□ 0.6
SGCEO43556 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC18.77■□□□□ 0.6
SGCEO43556 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SGCEO43556 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SGCEO43556 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC18.77■□□□□ 0.6
SGCEO43556 AC010542.4-201ENST00000563151 1910 ntBASIC18.76■□□□□ 0.59
SGCEO43556 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SGCEO43556 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SGCEO43556 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC18.76■□□□□ 0.59
SGCEO43556 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC18.76■□□□□ 0.59
SGCEO43556 SMUG1P1-201ENST00000590640 811 ntBASIC18.76■□□□□ 0.59
SGCEO43556 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
SGCEO43556 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC18.76■□□□□ 0.59
SGCEO43556 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
SGCEO43556 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SGCEO43556 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC18.76■□□□□ 0.59
SGCEO43556 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SGCEO43556 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SGCEO43556 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SGCEO43556 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC18.75■□□□□ 0.59
SGCEO43556 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SGCEO43556 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SGCEO43556 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
SGCEO43556 LHPP-203ENST00000392757 840 ntTSL 3 BASIC18.75■□□□□ 0.59
SGCEO43556 SUDS3P1-201ENST00000505831 966 ntBASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms