Protein–RNA interactions for Protein: Q9NQT5

EXOSC3, Exosome complex component RRP40, humanhuman

Known RBP Predictions only

Length 275 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3Q9NQT5 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.59■□□□□ 0.73
EXOSC3Q9NQT5 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
EXOSC3Q9NQT5 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC19.59■□□□□ 0.73
EXOSC3Q9NQT5 FBXW4P1-201ENST00000426721 2239 ntBASIC19.59■□□□□ 0.73
EXOSC3Q9NQT5 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
EXOSC3Q9NQT5 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC19.58■□□□□ 0.73
EXOSC3Q9NQT5 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
EXOSC3Q9NQT5 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
EXOSC3Q9NQT5 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
EXOSC3Q9NQT5 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.58■□□□□ 0.73
EXOSC3Q9NQT5 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
EXOSC3Q9NQT5 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC19.58■□□□□ 0.73
EXOSC3Q9NQT5 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
EXOSC3Q9NQT5 EBPL-204ENST00000378272 766 ntTSL 3 BASIC19.58■□□□□ 0.72
EXOSC3Q9NQT5 MIR572-201ENST00000384983 95 ntBASIC19.58■□□□□ 0.72
EXOSC3Q9NQT5 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
EXOSC3Q9NQT5 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC19.58■□□□□ 0.72
EXOSC3Q9NQT5 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
EXOSC3Q9NQT5 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC19.58■□□□□ 0.72
EXOSC3Q9NQT5 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
EXOSC3Q9NQT5 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
EXOSC3Q9NQT5 USP48-205ENST00000421625 2818 ntTSL 2 BASIC19.57■□□□□ 0.72
EXOSC3Q9NQT5 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.57■□□□□ 0.72
EXOSC3Q9NQT5 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
EXOSC3Q9NQT5 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
EXOSC3Q9NQT5 AC105233.4-201ENST00000642045 216 ntBASIC19.57■□□□□ 0.72
EXOSC3Q9NQT5 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
EXOSC3Q9NQT5 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
EXOSC3Q9NQT5 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
EXOSC3Q9NQT5 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
EXOSC3Q9NQT5 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
EXOSC3Q9NQT5 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.56■□□□□ 0.72
EXOSC3Q9NQT5 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
EXOSC3Q9NQT5 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
EXOSC3Q9NQT5 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
EXOSC3Q9NQT5 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
EXOSC3Q9NQT5 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
EXOSC3Q9NQT5 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC19.56■□□□□ 0.72
EXOSC3Q9NQT5 MFF-208ENST00000409616 1247 ntTSL 5 BASIC19.56■□□□□ 0.72
EXOSC3Q9NQT5 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC19.56■□□□□ 0.72
EXOSC3Q9NQT5 AC142381.2-201ENST00000566120 298 ntBASIC19.56■□□□□ 0.72
EXOSC3Q9NQT5 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
EXOSC3Q9NQT5 AC244015.2-201ENST00000616358 1861 ntBASIC19.56■□□□□ 0.72
EXOSC3Q9NQT5 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
EXOSC3Q9NQT5 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
EXOSC3Q9NQT5 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
EXOSC3Q9NQT5 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC19.55■□□□□ 0.72
EXOSC3Q9NQT5 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
EXOSC3Q9NQT5 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC19.55■□□□□ 0.72
EXOSC3Q9NQT5 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC19.55■□□□□ 0.72
EXOSC3Q9NQT5 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
EXOSC3Q9NQT5 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC19.55■□□□□ 0.72
EXOSC3Q9NQT5 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
EXOSC3Q9NQT5 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
EXOSC3Q9NQT5 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
EXOSC3Q9NQT5 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
EXOSC3Q9NQT5 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
EXOSC3Q9NQT5 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
EXOSC3Q9NQT5 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC19.55■□□□□ 0.72
EXOSC3Q9NQT5 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
EXOSC3Q9NQT5 AC104564.3-201ENST00000582367 638 ntBASIC19.55■□□□□ 0.72
EXOSC3Q9NQT5 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
EXOSC3Q9NQT5 AP006587.3-201ENST00000525742 1516 ntBASIC19.55■□□□□ 0.72
EXOSC3Q9NQT5 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
EXOSC3Q9NQT5 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
EXOSC3Q9NQT5 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
EXOSC3Q9NQT5 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
EXOSC3Q9NQT5 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
EXOSC3Q9NQT5 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
EXOSC3Q9NQT5 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC19.54■□□□□ 0.72
EXOSC3Q9NQT5 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC19.54■□□□□ 0.72
EXOSC3Q9NQT5 AC009237.3-201ENST00000393279 1427 ntBASIC19.54■□□□□ 0.72
EXOSC3Q9NQT5 EFS-203ENST00000429593 2610 ntTSL 2 BASIC19.54■□□□□ 0.72
EXOSC3Q9NQT5 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC19.54■□□□□ 0.72
EXOSC3Q9NQT5 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
EXOSC3Q9NQT5 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC19.54■□□□□ 0.72
EXOSC3Q9NQT5 AC005837.3-201ENST00000612163 286 ntBASIC19.54■□□□□ 0.72
EXOSC3Q9NQT5 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC19.54■□□□□ 0.72
EXOSC3Q9NQT5 ASL-203ENST00000380839 1765 ntTSL 5 BASIC19.54■□□□□ 0.72
EXOSC3Q9NQT5 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
EXOSC3Q9NQT5 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
EXOSC3Q9NQT5 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
EXOSC3Q9NQT5 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
EXOSC3Q9NQT5 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC19.53■□□□□ 0.72
EXOSC3Q9NQT5 AC026471.6-201ENST00000622954 1905 ntBASIC19.53■□□□□ 0.72
EXOSC3Q9NQT5 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.53■□□□□ 0.72
EXOSC3Q9NQT5 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC19.53■□□□□ 0.72
EXOSC3Q9NQT5 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
EXOSC3Q9NQT5 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
EXOSC3Q9NQT5 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
EXOSC3Q9NQT5 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC19.53■□□□□ 0.72
EXOSC3Q9NQT5 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC19.53■□□□□ 0.72
EXOSC3Q9NQT5 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC19.53■□□□□ 0.72
EXOSC3Q9NQT5 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
EXOSC3Q9NQT5 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
EXOSC3Q9NQT5 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
EXOSC3Q9NQT5 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
EXOSC3Q9NQT5 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.52■□□□□ 0.72
EXOSC3Q9NQT5 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC19.52■□□□□ 0.72
EXOSC3Q9NQT5 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms