Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AL031432.3-201ENST00000607698 485 ntBASIC23.07■■□□□ 1.28
SIX2Q9NPC8 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC23.07■■□□□ 1.28
SIX2Q9NPC8 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
SIX2Q9NPC8 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
SIX2Q9NPC8 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
SIX2Q9NPC8 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SIX2Q9NPC8 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
SIX2Q9NPC8 MFF-203ENST00000349901 1716 ntTSL 2 BASIC23.06■■□□□ 1.28
SIX2Q9NPC8 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SIX2Q9NPC8 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SIX2Q9NPC8 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC23.06■■□□□ 1.28
SIX2Q9NPC8 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC23.06■■□□□ 1.28
SIX2Q9NPC8 GRAMD4P4-201ENST00000613563 1115 ntBASIC23.06■■□□□ 1.28
SIX2Q9NPC8 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SIX2Q9NPC8 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC23.06■■□□□ 1.28
SIX2Q9NPC8 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC23.06■■□□□ 1.28
SIX2Q9NPC8 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SIX2Q9NPC8 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC23.06■■□□□ 1.28
SIX2Q9NPC8 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SIX2Q9NPC8 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SIX2Q9NPC8 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC23.05■■□□□ 1.28
SIX2Q9NPC8 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SIX2Q9NPC8 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC23.05■■□□□ 1.28
SIX2Q9NPC8 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC23.05■■□□□ 1.28
SIX2Q9NPC8 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SIX2Q9NPC8 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
SIX2Q9NPC8 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SIX2Q9NPC8 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC23.05■■□□□ 1.28
SIX2Q9NPC8 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC23.05■■□□□ 1.28
SIX2Q9NPC8 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
SIX2Q9NPC8 AC005229.4-201ENST00000610085 2198 ntBASIC23.05■■□□□ 1.28
SIX2Q9NPC8 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SIX2Q9NPC8 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC23.05■■□□□ 1.28
SIX2Q9NPC8 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
SIX2Q9NPC8 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
SIX2Q9NPC8 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC23.05■■□□□ 1.28
SIX2Q9NPC8 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SIX2Q9NPC8 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SIX2Q9NPC8 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SIX2Q9NPC8 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC23.04■■□□□ 1.28
SIX2Q9NPC8 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
SIX2Q9NPC8 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
SIX2Q9NPC8 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC23.04■■□□□ 1.28
SIX2Q9NPC8 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC23.04■■□□□ 1.28
SIX2Q9NPC8 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC23.04■■□□□ 1.28
SIX2Q9NPC8 MPST-208ENST00000628507 698 ntTSL 5 BASIC23.04■■□□□ 1.28
SIX2Q9NPC8 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC23.04■■□□□ 1.28
SIX2Q9NPC8 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SIX2Q9NPC8 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC23.04■■□□□ 1.28
SIX2Q9NPC8 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SIX2Q9NPC8 AP006587.3-201ENST00000525742 1516 ntBASIC23.03■■□□□ 1.28
SIX2Q9NPC8 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC23.03■■□□□ 1.28
SIX2Q9NPC8 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC23.03■■□□□ 1.28
SIX2Q9NPC8 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SIX2Q9NPC8 EDA-201ENST00000338901 1233 ntBASIC23.03■■□□□ 1.28
SIX2Q9NPC8 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC23.03■■□□□ 1.28
SIX2Q9NPC8 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC23.03■■□□□ 1.28
SIX2Q9NPC8 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC23.03■■□□□ 1.28
SIX2Q9NPC8 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SIX2Q9NPC8 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SIX2Q9NPC8 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SIX2Q9NPC8 ASL-203ENST00000380839 1765 ntTSL 5 BASIC23.02■■□□□ 1.28
SIX2Q9NPC8 MIR939-201ENST00000401314 82 ntBASIC23.02■■□□□ 1.28
SIX2Q9NPC8 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
SIX2Q9NPC8 AC027682.1-201ENST00000562846 899 ntBASIC23.02■■□□□ 1.28
SIX2Q9NPC8 AC104564.3-201ENST00000582367 638 ntBASIC23.02■■□□□ 1.28
SIX2Q9NPC8 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC23.02■■□□□ 1.28
SIX2Q9NPC8 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC23.02■■□□□ 1.28
SIX2Q9NPC8 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SIX2Q9NPC8 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
SIX2Q9NPC8 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SIX2Q9NPC8 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SIX2Q9NPC8 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
SIX2Q9NPC8 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC23.01■■□□□ 1.27
SIX2Q9NPC8 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SIX2Q9NPC8 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SIX2Q9NPC8 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SIX2Q9NPC8 FEM1AP4-201ENST00000443167 1987 ntBASIC23.01■■□□□ 1.27
SIX2Q9NPC8 PXK-203ENST00000383715 1756 ntTSL 5 BASIC23.01■■□□□ 1.27
SIX2Q9NPC8 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC23.01■■□□□ 1.27
SIX2Q9NPC8 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC23.01■■□□□ 1.27
SIX2Q9NPC8 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
SIX2Q9NPC8 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC23■■□□□ 1.27
SIX2Q9NPC8 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC23■■□□□ 1.27
SIX2Q9NPC8 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
SIX2Q9NPC8 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC23■■□□□ 1.27
SIX2Q9NPC8 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC23■■□□□ 1.27
SIX2Q9NPC8 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC23■■□□□ 1.27
SIX2Q9NPC8 AF213884.3-201ENST00000563833 479 ntBASIC23■■□□□ 1.27
SIX2Q9NPC8 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC23■■□□□ 1.27
SIX2Q9NPC8 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC23■■□□□ 1.27
SIX2Q9NPC8 AF106564.1-201ENST00000607058 2553 ntBASIC23■■□□□ 1.27
SIX2Q9NPC8 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
SIX2Q9NPC8 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
SIX2Q9NPC8 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC23■■□□□ 1.27
SIX2Q9NPC8 TSPY26P-201ENST00000476365 1326 ntBASIC23■■□□□ 1.27
SIX2Q9NPC8 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC22.99■■□□□ 1.27
SIX2Q9NPC8 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
SIX2Q9NPC8 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
SIX2Q9NPC8 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms