Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AC233992.3-201ENST00000607491 485 ntBASIC22.11■■□□□ 1.13
PCDH9Q9HC56 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC22.11■■□□□ 1.13
PCDH9Q9HC56 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC22.11■■□□□ 1.13
PCDH9Q9HC56 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC22.11■■□□□ 1.13
PCDH9Q9HC56 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PCDH9Q9HC56 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC22.1■■□□□ 1.13
PCDH9Q9HC56 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC22.1■■□□□ 1.13
PCDH9Q9HC56 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
PCDH9Q9HC56 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
PCDH9Q9HC56 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC22.1■■□□□ 1.13
PCDH9Q9HC56 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
PCDH9Q9HC56 AP001330.3-201ENST00000520123 633 ntBASIC22.1■■□□□ 1.13
PCDH9Q9HC56 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC22.1■■□□□ 1.13
PCDH9Q9HC56 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
PCDH9Q9HC56 AC008764.7-201ENST00000593779 1081 ntBASIC22.1■■□□□ 1.13
PCDH9Q9HC56 AL031432.3-201ENST00000607698 485 ntBASIC22.1■■□□□ 1.13
PCDH9Q9HC56 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
PCDH9Q9HC56 AC005229.4-201ENST00000610085 2198 ntBASIC22.09■■□□□ 1.13
PCDH9Q9HC56 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC22.09■■□□□ 1.13
PCDH9Q9HC56 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PCDH9Q9HC56 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
PCDH9Q9HC56 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC22.09■■□□□ 1.13
PCDH9Q9HC56 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PCDH9Q9HC56 AC026471.6-201ENST00000622954 1905 ntBASIC22.09■■□□□ 1.13
PCDH9Q9HC56 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PCDH9Q9HC56 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC22.09■■□□□ 1.13
PCDH9Q9HC56 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
PCDH9Q9HC56 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PCDH9Q9HC56 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PCDH9Q9HC56 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC22.09■■□□□ 1.13
PCDH9Q9HC56 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PCDH9Q9HC56 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
PCDH9Q9HC56 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
PCDH9Q9HC56 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
PCDH9Q9HC56 MIR638-201ENST00000385237 100 ntBASIC22.08■■□□□ 1.13
PCDH9Q9HC56 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
PCDH9Q9HC56 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
PCDH9Q9HC56 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
PCDH9Q9HC56 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC22.08■■□□□ 1.12
PCDH9Q9HC56 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
PCDH9Q9HC56 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC22.07■■□□□ 1.12
PCDH9Q9HC56 SUDS3P1-201ENST00000505831 966 ntBASIC22.07■■□□□ 1.12
PCDH9Q9HC56 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC22.07■■□□□ 1.12
PCDH9Q9HC56 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC22.07■■□□□ 1.12
PCDH9Q9HC56 AC027682.1-201ENST00000562846 899 ntBASIC22.07■■□□□ 1.12
PCDH9Q9HC56 AF213884.3-201ENST00000563833 479 ntBASIC22.07■■□□□ 1.12
PCDH9Q9HC56 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC22.07■■□□□ 1.12
PCDH9Q9HC56 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC22.07■■□□□ 1.12
PCDH9Q9HC56 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
PCDH9Q9HC56 AC005837.3-201ENST00000612163 286 ntBASIC22.07■■□□□ 1.12
PCDH9Q9HC56 AC087239.1-201ENST00000622671 572 ntBASIC22.07■■□□□ 1.12
PCDH9Q9HC56 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC22.07■■□□□ 1.12
PCDH9Q9HC56 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDH9Q9HC56 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC22.07■■□□□ 1.12
PCDH9Q9HC56 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDH9Q9HC56 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC22.07■■□□□ 1.12
PCDH9Q9HC56 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
PCDH9Q9HC56 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
PCDH9Q9HC56 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC22.06■■□□□ 1.12
PCDH9Q9HC56 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC22.06■■□□□ 1.12
PCDH9Q9HC56 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
PCDH9Q9HC56 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
PCDH9Q9HC56 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC22.06■■□□□ 1.12
PCDH9Q9HC56 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PCDH9Q9HC56 MIR939-201ENST00000401314 82 ntBASIC22.06■■□□□ 1.12
PCDH9Q9HC56 AC099791.1-201ENST00000416440 715 ntBASIC22.06■■□□□ 1.12
PCDH9Q9HC56 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC22.06■■□□□ 1.12
PCDH9Q9HC56 MAG-206ENST00000597035 542 ntTSL 4 BASIC22.06■■□□□ 1.12
PCDH9Q9HC56 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
PCDH9Q9HC56 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC22.06■■□□□ 1.12
PCDH9Q9HC56 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC22.06■■□□□ 1.12
PCDH9Q9HC56 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
PCDH9Q9HC56 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC22.06■■□□□ 1.12
PCDH9Q9HC56 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC22.06■■□□□ 1.12
PCDH9Q9HC56 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
PCDH9Q9HC56 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
PCDH9Q9HC56 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC22.05■■□□□ 1.12
PCDH9Q9HC56 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC22.05■■□□□ 1.12
PCDH9Q9HC56 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
PCDH9Q9HC56 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
PCDH9Q9HC56 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC22.05■■□□□ 1.12
PCDH9Q9HC56 AP005435.1-201ENST00000529293 1178 ntBASIC22.05■■□□□ 1.12
PCDH9Q9HC56 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC22.05■■□□□ 1.12
PCDH9Q9HC56 AC126544.1-201ENST00000580842 1059 ntBASIC22.05■■□□□ 1.12
PCDH9Q9HC56 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC22.05■■□□□ 1.12
PCDH9Q9HC56 AL136967.2-201ENST00000623968 743 ntBASIC22.05■■□□□ 1.12
PCDH9Q9HC56 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
PCDH9Q9HC56 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC22.05■■□□□ 1.12
PCDH9Q9HC56 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
PCDH9Q9HC56 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC22.05■■□□□ 1.12
PCDH9Q9HC56 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC22.05■■□□□ 1.12
PCDH9Q9HC56 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
PCDH9Q9HC56 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
PCDH9Q9HC56 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
PCDH9Q9HC56 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
PCDH9Q9HC56 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
PCDH9Q9HC56 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
PCDH9Q9HC56 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
PCDH9Q9HC56 AC010141.3-201ENST00000456659 717 ntBASIC22.04■■□□□ 1.12
PCDH9Q9HC56 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms