Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 DUSP8P5-201ENST00000422884 1815 ntBASIC6.55□□□□□ -1.36
SYNE1Q8NF91 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 ME2-208ENST00000638937 2471 ntTSL 5 BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 TSPY20P-201ENST00000450910 630 ntBASIC6.55□□□□□ -1.36
SYNE1Q8NF91 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 LINC02228-203ENST00000641970 1355 ntBASIC6.55□□□□□ -1.36
SYNE1Q8NF91 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 AC142086.2-201ENST00000569753 217 ntBASIC6.55□□□□□ -1.36
SYNE1Q8NF91 MARS-234ENST00000630571 216 ntTSL 5 BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 MARS-235ENST00000630803 183 ntTSL 3 BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC6.55□□□□□ -1.36
SYNE1Q8NF91 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC6.54□□□□□ -1.36
SYNE1Q8NF91 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC6.54□□□□□ -1.36
SYNE1Q8NF91 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
SYNE1Q8NF91 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
SYNE1Q8NF91 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC6.54□□□□□ -1.36
SYNE1Q8NF91 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC6.54□□□□□ -1.36
SYNE1Q8NF91 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
SYNE1Q8NF91 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.36
SYNE1Q8NF91 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC6.54□□□□□ -1.36
SYNE1Q8NF91 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
SYNE1Q8NF91 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
SYNE1Q8NF91 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC6.54□□□□□ -1.36
SYNE1Q8NF91 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC6.54□□□□□ -1.36
SYNE1Q8NF91 DBI-210ENST00000542275 757 ntTSL 5 BASIC6.54□□□□□ -1.36
SYNE1Q8NF91 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC6.54□□□□□ -1.36
SYNE1Q8NF91 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
SYNE1Q8NF91 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC6.54□□□□□ -1.36
SYNE1Q8NF91 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC6.54□□□□□ -1.36
SYNE1Q8NF91 AP004607.4-201ENST00000530158 1459 ntBASIC6.54□□□□□ -1.36
SYNE1Q8NF91 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC6.54□□□□□ -1.36
SYNE1Q8NF91 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC6.54□□□□□ -1.36
SYNE1Q8NF91 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
SYNE1Q8NF91 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC6.54□□□□□ -1.36
SYNE1Q8NF91 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
SYNE1Q8NF91 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
SYNE1Q8NF91 EED-207ENST00000528180 1745 ntTSL 5 BASIC6.54□□□□□ -1.36
SYNE1Q8NF91 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC6.54□□□□□ -1.36
SYNE1Q8NF91 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
SYNE1Q8NF91 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
SYNE1Q8NF91 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
SYNE1Q8NF91 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC6.54□□□□□ -1.36
SYNE1Q8NF91 TBCB-214ENST00000629269 413 ntTSL 5 BASIC6.54□□□□□ -1.36
SYNE1Q8NF91 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
SYNE1Q8NF91 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC6.54□□□□□ -1.36
SYNE1Q8NF91 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
SYNE1Q8NF91 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
SYNE1Q8NF91 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
SYNE1Q8NF91 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
SYNE1Q8NF91 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
SYNE1Q8NF91 OXCT2P1-201ENST00000447263 1535 ntBASIC6.53□□□□□ -1.36
SYNE1Q8NF91 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC6.53□□□□□ -1.36
SYNE1Q8NF91 AC137761.2-201ENST00000561729 223 ntBASIC6.53□□□□□ -1.36
SYNE1Q8NF91 AC145350.3-201ENST00000569033 163 ntBASIC6.53□□□□□ -1.36
SYNE1Q8NF91 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC6.53□□□□□ -1.36
SYNE1Q8NF91 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
SYNE1Q8NF91 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC6.53□□□□□ -1.36
SYNE1Q8NF91 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
SYNE1Q8NF91 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC6.53□□□□□ -1.36
SYNE1Q8NF91 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC6.53□□□□□ -1.36
SYNE1Q8NF91 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC6.53□□□□□ -1.36
SYNE1Q8NF91 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
SYNE1Q8NF91 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC6.53□□□□□ -1.36
SYNE1Q8NF91 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC6.53□□□□□ -1.36
SYNE1Q8NF91 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms