Protein–RNA interactions for Protein: Q38SD2

LRRK1, Leucine-rich repeat serine/threonine-protein kinase 1, humanhuman

Predictions only

Length 2,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1Q38SD2 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
LRRK1Q38SD2 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LRRK1Q38SD2 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LRRK1Q38SD2 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC21.27■■□□□ 1
LRRK1Q38SD2 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC21.27■■□□□ 1
LRRK1Q38SD2 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LRRK1Q38SD2 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC21.27■■□□□ 1
LRRK1Q38SD2 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
LRRK1Q38SD2 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC21.27■■□□□ 1
LRRK1Q38SD2 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC21.27■■□□□ 1
LRRK1Q38SD2 MFSD11-216ENST00000590393 1141 ntBASIC21.27■■□□□ 1
LRRK1Q38SD2 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC21.27■■□□□ 1
LRRK1Q38SD2 RAP2CP1-201ENST00000605103 478 ntBASIC21.27■■□□□ 1
LRRK1Q38SD2 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
LRRK1Q38SD2 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
LRRK1Q38SD2 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.27■■□□□ 1
LRRK1Q38SD2 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
LRRK1Q38SD2 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
LRRK1Q38SD2 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LRRK1Q38SD2 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LRRK1Q38SD2 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
LRRK1Q38SD2 HSCB-202ENST00000398941 955 ntTSL 2 BASIC21.26■□□□□ 0.99
LRRK1Q38SD2 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC21.26■□□□□ 0.99
LRRK1Q38SD2 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC21.26■□□□□ 0.99
LRRK1Q38SD2 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LRRK1Q38SD2 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LRRK1Q38SD2 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LRRK1Q38SD2 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LRRK1Q38SD2 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LRRK1Q38SD2 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.26■□□□□ 0.99
LRRK1Q38SD2 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
LRRK1Q38SD2 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LRRK1Q38SD2 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC21.26■□□□□ 0.99
LRRK1Q38SD2 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LRRK1Q38SD2 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC21.26■□□□□ 0.99
LRRK1Q38SD2 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LRRK1Q38SD2 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LRRK1Q38SD2 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LRRK1Q38SD2 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LRRK1Q38SD2 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LRRK1Q38SD2 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LRRK1Q38SD2 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC21.25■□□□□ 0.99
LRRK1Q38SD2 SERP1-208ENST00000491660 830 ntTSL 2 BASIC21.25■□□□□ 0.99
LRRK1Q38SD2 DLX3-202ENST00000512495 834 ntTSL 2 BASIC21.25■□□□□ 0.99
LRRK1Q38SD2 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC21.25■□□□□ 0.99
LRRK1Q38SD2 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.25■□□□□ 0.99
LRRK1Q38SD2 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LRRK1Q38SD2 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
LRRK1Q38SD2 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LRRK1Q38SD2 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LRRK1Q38SD2 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC21.24■□□□□ 0.99
LRRK1Q38SD2 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.24■□□□□ 0.99
LRRK1Q38SD2 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC21.24■□□□□ 0.99
LRRK1Q38SD2 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC21.24■□□□□ 0.99
LRRK1Q38SD2 AC092053.2-201ENST00000640557 1818 ntBASIC21.24■□□□□ 0.99
LRRK1Q38SD2 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LRRK1Q38SD2 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LRRK1Q38SD2 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
LRRK1Q38SD2 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC21.24■□□□□ 0.99
LRRK1Q38SD2 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LRRK1Q38SD2 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LRRK1Q38SD2 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC21.24■□□□□ 0.99
LRRK1Q38SD2 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
LRRK1Q38SD2 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC21.23■□□□□ 0.99
LRRK1Q38SD2 CNN2P6-201ENST00000439038 900 ntBASIC21.23■□□□□ 0.99
LRRK1Q38SD2 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC21.23■□□□□ 0.99
LRRK1Q38SD2 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
LRRK1Q38SD2 AC073111.5-205ENST00000641717 521 ntBASIC21.23■□□□□ 0.99
LRRK1Q38SD2 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LRRK1Q38SD2 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC21.23■□□□□ 0.99
LRRK1Q38SD2 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LRRK1Q38SD2 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LRRK1Q38SD2 AC010141.2-201ENST00000452426 721 ntBASIC21.22■□□□□ 0.99
LRRK1Q38SD2 DUX4L16-201ENST00000555130 1264 ntBASIC21.22■□□□□ 0.99
LRRK1Q38SD2 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
LRRK1Q38SD2 MYCNOS-205ENST00000641950 531 ntBASIC21.22■□□□□ 0.99
LRRK1Q38SD2 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
LRRK1Q38SD2 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.22■□□□□ 0.99
LRRK1Q38SD2 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
LRRK1Q38SD2 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
LRRK1Q38SD2 GUSBP5-202ENST00000510805 1989 ntBASIC21.22■□□□□ 0.99
LRRK1Q38SD2 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
LRRK1Q38SD2 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
LRRK1Q38SD2 MIR663A-201ENST00000385250 93 ntBASIC21.22■□□□□ 0.99
LRRK1Q38SD2 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC21.22■□□□□ 0.99
LRRK1Q38SD2 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC21.22■□□□□ 0.99
LRRK1Q38SD2 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
LRRK1Q38SD2 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
LRRK1Q38SD2 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
LRRK1Q38SD2 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.22■□□□□ 0.99
LRRK1Q38SD2 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.22■□□□□ 0.99
LRRK1Q38SD2 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
LRRK1Q38SD2 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC21.21■□□□□ 0.99
LRRK1Q38SD2 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC21.21■□□□□ 0.99
LRRK1Q38SD2 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LRRK1Q38SD2 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
LRRK1Q38SD2 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LRRK1Q38SD2 AC242852.2-201ENST00000615738 1807 ntBASIC21.21■□□□□ 0.99
LRRK1Q38SD2 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.21■□□□□ 0.99
LRRK1Q38SD2 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms