Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 PHF20L1-206ENST00000395376 2236 ntTSL 5 BASIC11.95□□□□□ -0.51e-7■■■■■ 172.3
SF3B1O75533 HDAC10-220ENST00000497952 976 ntTSL 511.93□□□□□ -0.51e-7■■■■■ 172.3
SF3B1O75533 KCNAB2-203ENST00000352527 4165 ntAPPRIS ALT1 TSL 1 (best) BASIC11.9□□□□□ -0.51e-7■■■■■ 172.3
SF3B1O75533 AFMID-211ENST00000589664 754 ntTSL 511.87□□□□□ -0.512e-14■■■■■ 172.3
SF3B1O75533 LZTR1-208ENST00000461510 413 ntTSL 211.86□□□□□ -0.512e-6■■■■■ 172.3
SF3B1O75533 MUTYH-238ENST00000533178 1225 ntTSL 511.84□□□□□ -0.511e-7■■■■■ 172.3
SF3B1O75533 TMEM14B-205ENST00000463100 502 ntTSL 411.83□□□□□ -0.521e-7■■■■■ 172.3
SF3B1O75533 EVL-214ENST00000555048 1715 ntTSL 3 BASIC11.82□□□□□ -0.521e-7■■■■■ 172.3
SF3B1O75533 UMPS-205ENST00000474588 1789 ntTSL 1 (best)11.77□□□□□ -0.531e-7■■■■■ 172.3
SF3B1O75533 AC011603.2-204ENST00000547712 418 ntTSL 2 BASIC11.77□□□□□ -0.531e-7■■■■■ 172.3
SF3B1O75533 PSMD8-208ENST00000592561 771 ntTSL 211.77□□□□□ -0.532e-6■■■■■ 172.3
SF3B1O75533 PLAGL1-217ENST00000628069 559 ntTSL 411.77□□□□□ -0.531e-7■■■■■ 172.3
SF3B1O75533 TMEM156-203ENST00000381938 1935 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.531e-7■■■■■ 172.3
SF3B1O75533 LGALS8-208ENST00000416919 6097 ntTSL 5 BASIC11.76□□□□□ -0.531e-7■■■■■ 172.3
SF3B1O75533 KIFAP3-206ENST00000538366 3159 ntTSL 2 BASIC11.75□□□□□ -0.531e-7■■■■■ 172.3
SF3B1O75533 KIAA0513-206ENST00000566428 7772 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.531e-7■■■■■ 172.3
SF3B1O75533 MIEF1-203ENST00000404569 3797 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.531e-7■■■■■ 172.3
SF3B1O75533 PARG-201ENST00000402038 4128 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.531e-7■■■■■ 172.3
SF3B1O75533 MXRA7-205ENST00000588114 521 ntAPPRIS ALT2 TSL 4 BASIC11.72□□□□□ -0.531e-7■■■■■ 172.3
SF3B1O75533 SIDT2-220ENST00000628876 2609 ntTSL 5 BASIC11.72□□□□□ -0.531e-7■■■■■ 172.3
SF3B1O75533 AC025287.1-201ENST00000564489 798 ntTSL 5 BASIC11.71□□□□□ -0.531e-7■■■■■ 172.3
SF3B1O75533 SERPINH1-203ENST00000525492 529 ntTSL 411.66□□□□□ -0.542e-14■■■■■ 172.3
SF3B1O75533 SLC9A1-201ENST00000263980 4516 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.551e-7■■■■■ 172.3
SF3B1O75533 TNRC6C-202ENST00000335749 9740 ntAPPRIS P4 TSL 5 BASIC11.61□□□□□ -0.551e-7■■■■■ 172.3
SF3B1O75533 AFMID-206ENST00000587750 541 ntTSL 311.6□□□□□ -0.552e-14■■■■■ 172.3
SF3B1O75533 BCOR-210ENST00000442018 2189 ntTSL 211.59□□□□□ -0.551e-7■■■■■ 172.3
SF3B1O75533 CARD8-205ENST00000517778 620 ntTSL 311.59□□□□□ -0.551e-7■■■■■ 172.3
SF3B1O75533 CCNB1IP1-216ENST00000557665 1331 ntTSL 511.58□□□□□ -0.564e-21■■■■■ 172.3
SF3B1O75533 MROH7-TTC4-204ENST00000606515 5162 ntAPPRIS ALT2 TSL 211.56□□□□□ -0.561e-7■■■■■ 172.3
SF3B1O75533 CCNB1IP1-205ENST00000398169 1631 ntAPPRIS P1 TSL 2 BASIC11.54□□□□□ -0.564e-21■■■■■ 172.3
SF3B1O75533 PIP4K2C-201ENST00000354947 2924 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.571e-7■■■■■ 172.3
SF3B1O75533 LGALS8-206ENST00000366584 4369 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.571e-7■■■■■ 172.3
SF3B1O75533 SIDT2-204ENST00000524842 834 ntTSL 311.48□□□□□ -0.571e-7■■■■■ 172.3
SF3B1O75533 ARPC2-212ENST00000477992 2221 ntTSL 211.47□□□□□ -0.571e-7■■■■■ 172.3
SF3B1O75533 ST3GAL5-238ENST00000639432 2297 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.571e-7■■■■■ 172.3
SF3B1O75533 LGALS8-205ENST00000366583 1547 ntTSL 311.46□□□□□ -0.581e-7■■■■■ 172.3
SF3B1O75533 CDC40-202ENST00000368930 1977 ntTSL 2 BASIC11.46□□□□□ -0.581e-7■■■■■ 172.3
SF3B1O75533 LY86-AS1-203ENST00000447858 938 ntTSL 3 BASIC11.45□□□□□ -0.581e-7■■■■■ 172.3
SF3B1O75533 IL23A-203ENST00000622119 709 ntTSL 211.44□□□□□ -0.581e-7■■■■■ 172.3
SF3B1O75533 LGALS8-207ENST00000406509 1035 ntTSL 511.44□□□□□ -0.581e-7■■■■■ 172.3
SF3B1O75533 ARFGAP2-205ENST00000524782 2976 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.581e-7■■■■■ 172.3
SF3B1O75533 TOR1AIP1-208ENST00000528443 3685 ntAPPRIS ALT2 TSL 2 BASIC11.41□□□□□ -0.581e-7■■■■■ 172.3
SF3B1O75533 KRBA1-207ENST00000496259 3763 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.581e-7■■■■■ 172.3
SF3B1O75533 KLHL3-207ENST00000506491 6566 ntTSL 1 (best) BASIC11.4□□□□□ -0.581e-7■■■■■ 172.3
SF3B1O75533 TAF1C-209ENST00000564208 3810 ntTSL 211.39□□□□□ -0.591e-7■■■■■ 172.3
SF3B1O75533 ARAP3-205ENST00000513878 3810 ntTSL 2 BASIC11.38□□□□□ -0.591e-7■■■■■ 172.3
SF3B1O75533 PNPLA4-201ENST00000381042 3372 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.591e-7■■■■■ 172.3
SF3B1O75533 PAQR7-201ENST00000374296 3297 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.591e-7■■■■■ 172.3
SF3B1O75533 POLG-221ENST00000637238 3022 ntTSL 511.34□□□□□ -0.591e-7■■■■■ 172.3
SF3B1O75533 SLC25A14-202ENST00000339231 1062 ntTSL 1 (best) BASIC11.33□□□□□ -0.61e-7■■■■■ 172.3
SF3B1O75533 UMPS-206ENST00000479719 2340 ntTSL 1 (best)11.32□□□□□ -0.61e-7■■■■■ 172.3
SF3B1O75533 ST3GAL5-254ENST00000640322 2368 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.61e-7■■■■■ 172.3
SF3B1O75533 KCNJ15-213ENST00000547341 595 ntTSL 311.32□□□□□ -0.61e-7■■■■■ 172.3
SF3B1O75533 KCNJ15-216ENST00000549158 626 ntTSL 311.32□□□□□ -0.61e-7■■■■■ 172.3
SF3B1O75533 LGALS8-213ENST00000454943 846 ntTSL 511.31□□□□□ -0.61e-7■■■■■ 172.3
SF3B1O75533 ACAD10-209ENST00000507683 833 ntTSL 311.28□□□□□ -0.61e-7■■■■■ 172.3
SF3B1O75533 FAM133B-207ENST00000480397 410 ntTSL 211.28□□□□□ -0.61e-7■■■■■ 172.3
SF3B1O75533 JADE2-207ENST00000453515 548 ntTSL 411.25□□□□□ -0.611e-7■■■■■ 172.3
SF3B1O75533 DHFR-205ENST00000511032 1474 ntTSL 2 BASIC11.24□□□□□ -0.611e-7■■■■■ 172.3
SF3B1O75533 KLHL3-201ENST00000309755 6806 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.611e-7■■■■■ 172.3
SF3B1O75533 PABPC1L-214ENST00000482486 541 ntTSL 211.21□□□□□ -0.612e-14■■■■■ 172.3
SF3B1O75533 VMP1-214ENST00000592106 341 ntTSL 511.21□□□□□ -0.611e-7■■■■■ 172.3
SF3B1O75533 MFSD14C-205ENST00000637099 832 ntTSL 211.2□□□□□ -0.621e-7■■■■■ 172.3
SF3B1O75533 MND1-206ENST00000622785 830 ntTSL 2 BASIC11.19□□□□□ -0.621e-7■■■■■ 172.3
SF3B1O75533 MGAT5B-203ENST00000428789 4053 ntTSL 1 (best) BASIC11.19□□□□□ -0.622e-14■■■■■ 172.3
SF3B1O75533 KIFAP3-201ENST00000361580 2957 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.621e-7■■■■■ 172.3
SF3B1O75533 WDR37-202ENST00000358220 4582 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.631e-7■■■■■ 172.3
SF3B1O75533 TEP1-209ENST00000556935 7643 ntTSL 1 (best) BASIC11.11□□□□□ -0.631e-7■■■■■ 172.3
SF3B1O75533 PPP1R16B-203ENST00000463749 268 ntTSL 211.08□□□□□ -0.641e-7■■■■■ 172.3
SF3B1O75533 CWC15-202ENST00000539856 905 ntTSL 211.08□□□□□ -0.641e-7■■■■■ 172.3
SF3B1O75533 SKA1-204ENST00000488454 669 ntTSL 3 BASIC11.08□□□□□ -0.641e-7■■■■■ 172.3
SF3B1O75533 CCNB1IP1-208ENST00000553516 669 ntTSL 211.08□□□□□ -0.644e-21■■■■■ 172.3
SF3B1O75533 ST3GAL5-257ENST00000640418 2467 ntTSL 5 BASIC11.07□□□□□ -0.641e-7■■■■■ 172.3
SF3B1O75533 TMPRSS4-218ENST00000534111 5550 ntAPPRIS ALT2 TSL 2 BASIC11.07□□□□□ -0.641e-7■■■■■ 172.3
SF3B1O75533 PAXIP1-201ENST00000397192 3711 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.641e-7■■■■■ 172.3
SF3B1O75533 SIDT2-202ENST00000324225 4406 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.641e-7■■■■■ 172.3
SF3B1O75533 BAP1-201ENST00000296288 3434 ntTSL 5 BASIC11□□□□□ -0.651e-7■■■■■ 172.3
SF3B1O75533 SPINT1-207ENST00000566928 720 ntTSL 310.99□□□□□ -0.651e-7■■■■■ 172.3
SF3B1O75533 RNF138-202ENST00000261593 3570 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.651e-7■■■■■ 172.3
SF3B1O75533 TRMT44-203ENST00000511149 508 ntTSL 410.94□□□□□ -0.661e-7■■■■■ 172.3
SF3B1O75533 PLAGL1-204ENST00000367572 2496 ntTSL 1 (best) BASIC10.94□□□□□ -0.661e-7■■■■■ 172.3
SF3B1O75533 KCNJ15-219ENST00000551422 413 ntTSL 210.93□□□□□ -0.661e-7■■■■■ 172.3
SF3B1O75533 KCNJ15-214ENST00000547595 313 ntTSL 210.93□□□□□ -0.661e-7■■■■■ 172.3
SF3B1O75533 SIDT2-201ENST00000278951 3135 ntTSL 510.93□□□□□ -0.661e-7■■■■■ 172.3
SF3B1O75533 DDX10-201ENST00000322536 3264 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.661e-6■■■■■ 172.3
SF3B1O75533 ACIN1-210ENST00000554680 888 ntTSL 210.9□□□□□ -0.661e-7■■■■■ 172.3
SF3B1O75533 SLC25A14-214ENST00000545805 1650 ntTSL 5 BASIC10.89□□□□□ -0.671e-7■■■■■ 172.3
SF3B1O75533 CARD8-220ENST00000521437 579 ntTSL 410.88□□□□□ -0.671e-7■■■■■ 172.3
SF3B1O75533 CCNB1IP1-203ENST00000398160 1613 ntAPPRIS P1 TSL 2 BASIC10.83□□□□□ -0.684e-21■■■■■ 172.3
SF3B1O75533 BBS1-210ENST00000526760 3585 ntTSL 210.83□□□□□ -0.681e-7■■■■■ 172.3
SF3B1O75533 MROH7-TTC4-203ENST00000460155 3561 ntTSL 210.81□□□□□ -0.681e-7■■■■■ 172.3
SF3B1O75533 KCNJ15-218ENST00000549932 555 ntTSL 210.81□□□□□ -0.681e-7■■■■■ 172.3
SF3B1O75533 LGALS8-219ENST00000526589 6420 ntAPPRIS P4 TSL 5 BASIC10.8□□□□□ -0.681e-7■■■■■ 172.3
SF3B1O75533 VEGFB-204ENST00000543462 663 ntTSL 210.74□□□□□ -0.692e-14■■■■■ 172.3
SF3B1O75533 ARPC2-209ENST00000470146 2226 ntTSL 210.72□□□□□ -0.691e-7■■■■■ 172.3
SF3B1O75533 CRK-203ENST00000572145 830 ntTSL 310.72□□□□□ -0.691e-7■■■■■ 172.3
SF3B1O75533 PLAGL1-203ENST00000367571 2800 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.691e-7■■■■■ 172.3
SF3B1O75533 DNAJB14-201ENST00000334223 2617 ntTSL 1 (best)10.69□□□□□ -0.71e-7■■■■■ 172.3
SF3B1O75533 SKA1-201ENST00000285116 2905 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.71e-7■■■■■ 172.3
SF3B1O75533 EIF3D-204ENST00000426531 710 ntTSL 210.66□□□□□ -0.71e-7■■■■■ 172.3
Retrieved 100 of 46,956 protein–RNA pairs in 2112.1 ms