Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
PROM1O43490 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PROM1O43490 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PROM1O43490 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PROM1O43490 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PROM1O43490 AC105265.2-201ENST00000467189 838 ntBASIC20.31■□□□□ 0.84
PROM1O43490 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.31■□□□□ 0.84
PROM1O43490 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.31■□□□□ 0.84
PROM1O43490 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.31■□□□□ 0.84
PROM1O43490 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
PROM1O43490 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.31■□□□□ 0.84
PROM1O43490 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PROM1O43490 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.3■□□□□ 0.84
PROM1O43490 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PROM1O43490 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.3■□□□□ 0.84
PROM1O43490 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PROM1O43490 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
PROM1O43490 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.3■□□□□ 0.84
PROM1O43490 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PROM1O43490 GUK1-205ENST00000366722 850 ntTSL 3 BASIC20.3■□□□□ 0.84
PROM1O43490 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.3■□□□□ 0.84
PROM1O43490 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.3■□□□□ 0.84
PROM1O43490 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.3■□□□□ 0.84
PROM1O43490 RHOF-204ENST00000537265 699 ntTSL 2 BASIC20.3■□□□□ 0.84
PROM1O43490 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC20.3■□□□□ 0.84
PROM1O43490 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
PROM1O43490 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.3■□□□□ 0.84
PROM1O43490 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PROM1O43490 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PROM1O43490 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
PROM1O43490 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.3■□□□□ 0.84
PROM1O43490 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PROM1O43490 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PROM1O43490 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PROM1O43490 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
PROM1O43490 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PROM1O43490 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PROM1O43490 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
PROM1O43490 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PROM1O43490 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
PROM1O43490 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PROM1O43490 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.29■□□□□ 0.84
PROM1O43490 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.29■□□□□ 0.84
PROM1O43490 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PROM1O43490 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.29■□□□□ 0.84
PROM1O43490 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
PROM1O43490 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PROM1O43490 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PROM1O43490 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
PROM1O43490 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.28■□□□□ 0.84
PROM1O43490 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.28■□□□□ 0.84
PROM1O43490 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.28■□□□□ 0.84
PROM1O43490 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PROM1O43490 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PROM1O43490 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PROM1O43490 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PROM1O43490 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
PROM1O43490 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
PROM1O43490 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
PROM1O43490 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.27■□□□□ 0.84
PROM1O43490 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PROM1O43490 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PROM1O43490 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.27■□□□□ 0.84
PROM1O43490 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.27■□□□□ 0.84
PROM1O43490 IRS3P-201ENST00000223076 1006 ntBASIC20.27■□□□□ 0.84
PROM1O43490 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.27■□□□□ 0.84
PROM1O43490 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PROM1O43490 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20.27■□□□□ 0.84
PROM1O43490 ZNRF2P3-201ENST00000424200 374 ntBASIC20.27■□□□□ 0.84
PROM1O43490 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.27■□□□□ 0.84
PROM1O43490 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.27■□□□□ 0.84
PROM1O43490 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.27■□□□□ 0.84
PROM1O43490 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PROM1O43490 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PROM1O43490 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.27■□□□□ 0.84
PROM1O43490 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PROM1O43490 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
PROM1O43490 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
PROM1O43490 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PROM1O43490 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PROM1O43490 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
PROM1O43490 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.26■□□□□ 0.83
PROM1O43490 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
PROM1O43490 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PROM1O43490 AC026471.6-201ENST00000622954 1905 ntBASIC20.26■□□□□ 0.83
PROM1O43490 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
PROM1O43490 AC012414.1-201ENST00000556676 535 ntBASIC20.26■□□□□ 0.83
PROM1O43490 RARRES2P6-201ENST00000567333 442 ntBASIC20.26■□□□□ 0.83
PROM1O43490 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.26■□□□□ 0.83
PROM1O43490 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.26■□□□□ 0.83
PROM1O43490 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PROM1O43490 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PROM1O43490 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
PROM1O43490 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.26■□□□□ 0.83
PROM1O43490 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PROM1O43490 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
PROM1O43490 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.25■□□□□ 0.83
PROM1O43490 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PROM1O43490 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PROM1O43490 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms