Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VPS35Q96QK1 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
VPS35Q96QK1 ECEL1P1-201ENST00000373592 1742 ntBASIC21.3■■□□□ 1
VPS35Q96QK1 AC092053.2-201ENST00000640557 1818 ntBASIC21.3■■□□□ 1
VPS35Q96QK1 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
VPS35Q96QK1 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC21.3■■□□□ 1
VPS35Q96QK1 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VPS35Q96QK1 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
VPS35Q96QK1 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC21.3■■□□□ 1
VPS35Q96QK1 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC21.3■■□□□ 1
VPS35Q96QK1 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
VPS35Q96QK1 MIR935-201ENST00000401179 91 ntBASIC21.3■■□□□ 1
VPS35Q96QK1 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC21.3■■□□□ 1
VPS35Q96QK1 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC21.3■■□□□ 1
VPS35Q96QK1 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC21.3■■□□□ 1
VPS35Q96QK1 AC005224.4-201ENST00000583262 1652 ntBASIC21.3■■□□□ 1
VPS35Q96QK1 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
VPS35Q96QK1 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
VPS35Q96QK1 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VPS35Q96QK1 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
VPS35Q96QK1 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC21.29■■□□□ 1
VPS35Q96QK1 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC21.29■■□□□ 1
VPS35Q96QK1 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
VPS35Q96QK1 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.29■■□□□ 1
VPS35Q96QK1 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.29■■□□□ 1
VPS35Q96QK1 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.29■■□□□ 1
VPS35Q96QK1 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC21.29■■□□□ 1
VPS35Q96QK1 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC21.29■■□□□ 1
VPS35Q96QK1 TERF1P2-201ENST00000583350 1212 ntBASIC21.29■■□□□ 1
VPS35Q96QK1 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC21.29■■□□□ 1
VPS35Q96QK1 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
VPS35Q96QK1 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
VPS35Q96QK1 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.29■■□□□ 1
VPS35Q96QK1 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
VPS35Q96QK1 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
VPS35Q96QK1 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.28■■□□□ 1
VPS35Q96QK1 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VPS35Q96QK1 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VPS35Q96QK1 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VPS35Q96QK1 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VPS35Q96QK1 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VPS35Q96QK1 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC21.28■■□□□ 1
VPS35Q96QK1 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.28■■□□□ 1
VPS35Q96QK1 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VPS35Q96QK1 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
VPS35Q96QK1 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC21.28■■□□□ 1
VPS35Q96QK1 PLD4-205ENST00000553861 667 ntTSL 2 BASIC21.28■■□□□ 1
VPS35Q96QK1 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC21.28■■□□□ 1
VPS35Q96QK1 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC21.28■■□□□ 1
VPS35Q96QK1 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC21.28■■□□□ 1
VPS35Q96QK1 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC21.28■■□□□ 1
VPS35Q96QK1 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC21.28■■□□□ 1
VPS35Q96QK1 CPT2-209ENST00000636935 803 ntTSL 5 BASIC21.28■■□□□ 1
VPS35Q96QK1 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VPS35Q96QK1 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.28■■□□□ 1
VPS35Q96QK1 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
VPS35Q96QK1 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
VPS35Q96QK1 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC21.27■■□□□ 1
VPS35Q96QK1 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC21.27■■□□□ 1
VPS35Q96QK1 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC21.27■■□□□ 1
VPS35Q96QK1 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
VPS35Q96QK1 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
VPS35Q96QK1 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
VPS35Q96QK1 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
VPS35Q96QK1 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC21.27■■□□□ 1
VPS35Q96QK1 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
VPS35Q96QK1 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC21.27■■□□□ 1
VPS35Q96QK1 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC21.27■■□□□ 1
VPS35Q96QK1 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21.27■■□□□ 1
VPS35Q96QK1 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
VPS35Q96QK1 AC079834.2-201ENST00000609776 1949 ntBASIC21.27■■□□□ 1
VPS35Q96QK1 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
VPS35Q96QK1 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS35Q96QK1 AL117328.2-201ENST00000624617 1940 ntBASIC21.26■□□□□ 0.99
VPS35Q96QK1 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS35Q96QK1 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
VPS35Q96QK1 CCDC92B-201ENST00000575506 885 ntBASIC21.26■□□□□ 0.99
VPS35Q96QK1 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC21.26■□□□□ 0.99
VPS35Q96QK1 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC21.26■□□□□ 0.99
VPS35Q96QK1 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
VPS35Q96QK1 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS35Q96QK1 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC21.26■□□□□ 0.99
VPS35Q96QK1 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
VPS35Q96QK1 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
VPS35Q96QK1 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC21.26■□□□□ 0.99
VPS35Q96QK1 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS35Q96QK1 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS35Q96QK1 AC055733.4-201ENST00000638462 1354 ntBASIC21.25■□□□□ 0.99
VPS35Q96QK1 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS35Q96QK1 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.25■□□□□ 0.99
VPS35Q96QK1 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS35Q96QK1 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS35Q96QK1 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC21.25■□□□□ 0.99
VPS35Q96QK1 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
VPS35Q96QK1 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC21.25■□□□□ 0.99
VPS35Q96QK1 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC21.25■□□□□ 0.99
VPS35Q96QK1 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
VPS35Q96QK1 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS35Q96QK1 AC087623.3-201ENST00000607047 1098 ntBASIC21.25■□□□□ 0.99
VPS35Q96QK1 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.25■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms