Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC21.25■□□□□ 0.99
Ushbp1Q8R370 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ushbp1Q8R370 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ushbp1Q8R370 AC137127.1-201ENSMUST00000213466 1078 ntBASIC21.25■□□□□ 0.99
Ushbp1Q8R370 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ushbp1Q8R370 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ushbp1Q8R370 AC126028.2-201ENSMUST00000228100 1833 ntBASIC21.25■□□□□ 0.99
Ushbp1Q8R370 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ushbp1Q8R370 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ushbp1Q8R370 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Ushbp1Q8R370 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ushbp1Q8R370 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
Ushbp1Q8R370 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Ushbp1Q8R370 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Ushbp1Q8R370 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
Ushbp1Q8R370 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ushbp1Q8R370 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ushbp1Q8R370 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ushbp1Q8R370 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Ushbp1Q8R370 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ushbp1Q8R370 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ushbp1Q8R370 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ushbp1Q8R370 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
Ushbp1Q8R370 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ushbp1Q8R370 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ushbp1Q8R370 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ushbp1Q8R370 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ushbp1Q8R370 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Ushbp1Q8R370 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ushbp1Q8R370 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC21.23■□□□□ 0.99
Ushbp1Q8R370 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Ushbp1Q8R370 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ushbp1Q8R370 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Ushbp1Q8R370 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ushbp1Q8R370 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC21.22■□□□□ 0.99
Ushbp1Q8R370 Gm9988-201ENSMUST00000069786 435 ntBASIC21.22■□□□□ 0.99
Ushbp1Q8R370 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ushbp1Q8R370 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ushbp1Q8R370 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ushbp1Q8R370 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ushbp1Q8R370 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Ushbp1Q8R370 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Ushbp1Q8R370 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Ushbp1Q8R370 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ushbp1Q8R370 Gm18688-201ENSMUST00000204695 1859 ntBASIC21.22■□□□□ 0.99
Ushbp1Q8R370 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Ushbp1Q8R370 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ushbp1Q8R370 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Ushbp1Q8R370 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC21.21■□□□□ 0.99
Ushbp1Q8R370 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Ushbp1Q8R370 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ushbp1Q8R370 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ushbp1Q8R370 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC21.21■□□□□ 0.99
Ushbp1Q8R370 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Ushbp1Q8R370 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ushbp1Q8R370 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ushbp1Q8R370 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.99
Ushbp1Q8R370 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ushbp1Q8R370 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ushbp1Q8R370 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ushbp1Q8R370 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ushbp1Q8R370 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Ushbp1Q8R370 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ushbp1Q8R370 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ushbp1Q8R370 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Ushbp1Q8R370 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC21.2■□□□□ 0.98
Ushbp1Q8R370 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ushbp1Q8R370 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC21.2■□□□□ 0.98
Ushbp1Q8R370 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Ushbp1Q8R370 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ushbp1Q8R370 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ushbp1Q8R370 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ushbp1Q8R370 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC21.19■□□□□ 0.98
Ushbp1Q8R370 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ushbp1Q8R370 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Ushbp1Q8R370 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ushbp1Q8R370 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ushbp1Q8R370 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ushbp1Q8R370 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Ushbp1Q8R370 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ushbp1Q8R370 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
Ushbp1Q8R370 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Ushbp1Q8R370 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Ushbp1Q8R370 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ushbp1Q8R370 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC21.18■□□□□ 0.98
Ushbp1Q8R370 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ushbp1Q8R370 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ushbp1Q8R370 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ushbp1Q8R370 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ushbp1Q8R370 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ushbp1Q8R370 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ushbp1Q8R370 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
Ushbp1Q8R370 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ushbp1Q8R370 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
Ushbp1Q8R370 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC21.17■□□□□ 0.98
Ushbp1Q8R370 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC21.17■□□□□ 0.98
Ushbp1Q8R370 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Ushbp1Q8R370 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Ushbp1Q8R370 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ushbp1Q8R370 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms