Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC23.24■■□□□ 1.31
KRT39Q6A163 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC23.24■■□□□ 1.31
KRT39Q6A163 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
KRT39Q6A163 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
KRT39Q6A163 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
KRT39Q6A163 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
KRT39Q6A163 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC23.24■■□□□ 1.31
KRT39Q6A163 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
KRT39Q6A163 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
KRT39Q6A163 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC23.23■■□□□ 1.31
KRT39Q6A163 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
KRT39Q6A163 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
KRT39Q6A163 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC23.23■■□□□ 1.31
KRT39Q6A163 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC23.23■■□□□ 1.31
KRT39Q6A163 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
KRT39Q6A163 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
KRT39Q6A163 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC23.23■■□□□ 1.31
KRT39Q6A163 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
KRT39Q6A163 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
KRT39Q6A163 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC23.22■■□□□ 1.31
KRT39Q6A163 STOX2-205ENST00000513034 807 ntTSL 3 BASIC23.22■■□□□ 1.31
KRT39Q6A163 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC23.22■■□□□ 1.31
KRT39Q6A163 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
KRT39Q6A163 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
KRT39Q6A163 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
KRT39Q6A163 ASL-203ENST00000380839 1765 ntTSL 5 BASIC23.22■■□□□ 1.31
KRT39Q6A163 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC23.21■■□□□ 1.31
KRT39Q6A163 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
KRT39Q6A163 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC23.21■■□□□ 1.31
KRT39Q6A163 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
KRT39Q6A163 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
KRT39Q6A163 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC23.21■■□□□ 1.31
KRT39Q6A163 AC105265.2-201ENST00000467189 838 ntBASIC23.21■■□□□ 1.31
KRT39Q6A163 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC23.21■■□□□ 1.31
KRT39Q6A163 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
KRT39Q6A163 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
KRT39Q6A163 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
KRT39Q6A163 BID-212ENST00000614949 1988 ntTSL 5 BASIC23.21■■□□□ 1.31
KRT39Q6A163 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
KRT39Q6A163 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
KRT39Q6A163 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC23.2■■□□□ 1.3
KRT39Q6A163 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
KRT39Q6A163 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC23.2■■□□□ 1.3
KRT39Q6A163 MFF-208ENST00000409616 1247 ntTSL 5 BASIC23.2■■□□□ 1.3
KRT39Q6A163 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC23.2■■□□□ 1.3
KRT39Q6A163 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC23.2■■□□□ 1.3
KRT39Q6A163 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
KRT39Q6A163 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC23.19■■□□□ 1.3
KRT39Q6A163 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC23.19■■□□□ 1.3
KRT39Q6A163 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC23.19■■□□□ 1.3
KRT39Q6A163 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
KRT39Q6A163 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
KRT39Q6A163 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
KRT39Q6A163 FBXW4P1-201ENST00000426721 2239 ntBASIC23.19■■□□□ 1.3
KRT39Q6A163 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
KRT39Q6A163 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
KRT39Q6A163 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC23.19■■□□□ 1.3
KRT39Q6A163 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
KRT39Q6A163 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
KRT39Q6A163 RHOF-204ENST00000537265 699 ntTSL 2 BASIC23.19■■□□□ 1.3
KRT39Q6A163 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC23.19■■□□□ 1.3
KRT39Q6A163 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC23.19■■□□□ 1.3
KRT39Q6A163 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC23.19■■□□□ 1.3
KRT39Q6A163 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
KRT39Q6A163 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
KRT39Q6A163 AC010542.4-201ENST00000563151 1910 ntBASIC23.19■■□□□ 1.3
KRT39Q6A163 AC026471.6-201ENST00000622954 1905 ntBASIC23.19■■□□□ 1.3
KRT39Q6A163 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
KRT39Q6A163 GOLGA2P6-201ENST00000340929 2049 ntBASIC23.18■■□□□ 1.3
KRT39Q6A163 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
KRT39Q6A163 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC23.18■■□□□ 1.3
KRT39Q6A163 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC23.18■■□□□ 1.3
KRT39Q6A163 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
KRT39Q6A163 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
KRT39Q6A163 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
KRT39Q6A163 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
KRT39Q6A163 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
KRT39Q6A163 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC23.17■■□□□ 1.3
KRT39Q6A163 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC23.17■■□□□ 1.3
KRT39Q6A163 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
KRT39Q6A163 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
KRT39Q6A163 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
KRT39Q6A163 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC23.17■■□□□ 1.3
KRT39Q6A163 AC012414.1-201ENST00000556676 535 ntBASIC23.17■■□□□ 1.3
KRT39Q6A163 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC23.17■■□□□ 1.3
KRT39Q6A163 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
KRT39Q6A163 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC23.17■■□□□ 1.3
KRT39Q6A163 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
KRT39Q6A163 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC23.17■■□□□ 1.3
KRT39Q6A163 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
KRT39Q6A163 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC23.17■■□□□ 1.3
KRT39Q6A163 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
KRT39Q6A163 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
KRT39Q6A163 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
KRT39Q6A163 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC23.16■■□□□ 1.3
KRT39Q6A163 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
KRT39Q6A163 IRS3P-201ENST00000223076 1006 ntBASIC23.16■■□□□ 1.3
KRT39Q6A163 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
KRT39Q6A163 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC23.16■■□□□ 1.3
KRT39Q6A163 BX005040.4-201ENST00000637145 1518 ntBASIC23.16■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms