Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
CHD9Q3L8U1 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
CHD9Q3L8U1 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC23.09■■□□□ 1.29
CHD9Q3L8U1 AC026366.1-201ENST00000488803 879 ntBASIC23.09■■□□□ 1.29
CHD9Q3L8U1 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CHD9Q3L8U1 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.29
CHD9Q3L8U1 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CHD9Q3L8U1 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CHD9Q3L8U1 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CHD9Q3L8U1 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC23.08■■□□□ 1.29
CHD9Q3L8U1 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CHD9Q3L8U1 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CHD9Q3L8U1 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC23.08■■□□□ 1.29
CHD9Q3L8U1 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
CHD9Q3L8U1 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC23.08■■□□□ 1.29
CHD9Q3L8U1 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
CHD9Q3L8U1 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC23.08■■□□□ 1.28
CHD9Q3L8U1 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC23.07■■□□□ 1.28
CHD9Q3L8U1 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CHD9Q3L8U1 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
CHD9Q3L8U1 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CHD9Q3L8U1 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CHD9Q3L8U1 AC091874.3-201ENST00000512672 1195 ntBASIC23.07■■□□□ 1.28
CHD9Q3L8U1 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
CHD9Q3L8U1 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC23.07■■□□□ 1.28
CHD9Q3L8U1 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC23.07■■□□□ 1.28
CHD9Q3L8U1 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CHD9Q3L8U1 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC23.07■■□□□ 1.28
CHD9Q3L8U1 KRT18P20-201ENST00000548986 1279 ntBASIC23.07■■□□□ 1.28
CHD9Q3L8U1 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CHD9Q3L8U1 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CHD9Q3L8U1 MIR1224-201ENST00000408193 85 ntBASIC23.06■■□□□ 1.28
CHD9Q3L8U1 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
CHD9Q3L8U1 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CHD9Q3L8U1 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CHD9Q3L8U1 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC23.06■■□□□ 1.28
CHD9Q3L8U1 PEX7-202ENST00000367756 680 ntTSL 3 BASIC23.06■■□□□ 1.28
CHD9Q3L8U1 FAM210CP-201ENST00000445714 574 ntBASIC23.06■■□□□ 1.28
CHD9Q3L8U1 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
CHD9Q3L8U1 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC23.05■■□□□ 1.28
CHD9Q3L8U1 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CHD9Q3L8U1 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC23.05■■□□□ 1.28
CHD9Q3L8U1 AL512625.2-201ENST00000417533 625 ntBASIC23.05■■□□□ 1.28
CHD9Q3L8U1 MAX-217ENST00000557277 728 ntTSL 3 BASIC23.05■■□□□ 1.28
CHD9Q3L8U1 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CHD9Q3L8U1 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC23.05■■□□□ 1.28
CHD9Q3L8U1 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CHD9Q3L8U1 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC23.05■■□□□ 1.28
CHD9Q3L8U1 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC23.05■■□□□ 1.28
CHD9Q3L8U1 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CHD9Q3L8U1 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
CHD9Q3L8U1 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CHD9Q3L8U1 TERF1P5-201ENST00000477545 1207 ntBASIC23.04■■□□□ 1.28
CHD9Q3L8U1 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC23.04■■□□□ 1.28
CHD9Q3L8U1 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC23.04■■□□□ 1.28
CHD9Q3L8U1 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC23.04■■□□□ 1.28
CHD9Q3L8U1 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC23.04■■□□□ 1.28
CHD9Q3L8U1 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CHD9Q3L8U1 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC23.04■■□□□ 1.28
CHD9Q3L8U1 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CHD9Q3L8U1 AC016405.3-201ENST00000607710 860 ntBASIC23.04■■□□□ 1.28
CHD9Q3L8U1 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC23.04■■□□□ 1.28
CHD9Q3L8U1 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC23.04■■□□□ 1.28
CHD9Q3L8U1 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CHD9Q3L8U1 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC23.03■■□□□ 1.28
CHD9Q3L8U1 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CHD9Q3L8U1 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC23.03■■□□□ 1.28
CHD9Q3L8U1 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
CHD9Q3L8U1 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CHD9Q3L8U1 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC23.03■■□□□ 1.28
CHD9Q3L8U1 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
CHD9Q3L8U1 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CHD9Q3L8U1 BET1L-207ENST00000529614 560 ntTSL 5 BASIC23.03■■□□□ 1.28
CHD9Q3L8U1 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
CHD9Q3L8U1 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CHD9Q3L8U1 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC23.03■■□□□ 1.28
CHD9Q3L8U1 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CHD9Q3L8U1 BMP1-204ENST00000397814 836 ntTSL 4 BASIC23.03■■□□□ 1.28
CHD9Q3L8U1 AC138907.5-202ENST00000569484 235 ntBASIC23.03■■□□□ 1.28
CHD9Q3L8U1 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC23.03■■□□□ 1.28
CHD9Q3L8U1 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC23.02■■□□□ 1.28
CHD9Q3L8U1 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC23.02■■□□□ 1.28
CHD9Q3L8U1 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
CHD9Q3L8U1 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
CHD9Q3L8U1 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CHD9Q3L8U1 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
CHD9Q3L8U1 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CHD9Q3L8U1 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
CHD9Q3L8U1 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
CHD9Q3L8U1 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CHD9Q3L8U1 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CHD9Q3L8U1 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
CHD9Q3L8U1 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC23.01■■□□□ 1.27
CHD9Q3L8U1 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC23.01■■□□□ 1.27
CHD9Q3L8U1 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
CHD9Q3L8U1 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CHD9Q3L8U1 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC23.01■■□□□ 1.27
CHD9Q3L8U1 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
CHD9Q3L8U1 ABCB10P4-201ENST00000566803 2184 ntBASIC23.01■■□□□ 1.27
CHD9Q3L8U1 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC23■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms