Protein–RNA interactions for Protein: P48059

LIMS1, LIM and senescent cell antigen-like-containing domain protein 1, humanhuman

Predictions only

Length 325 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1P48059 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
LIMS1P48059 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
LIMS1P48059 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
LIMS1P48059 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIMS1P48059 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIMS1P48059 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC19.66■□□□□ 0.74
LIMS1P48059 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIMS1P48059 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIMS1P48059 AL157384.1-201ENST00000445995 2473 ntBASIC19.65■□□□□ 0.74
LIMS1P48059 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LIMS1P48059 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
LIMS1P48059 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC19.65■□□□□ 0.74
LIMS1P48059 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC19.65■□□□□ 0.74
LIMS1P48059 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.65■□□□□ 0.74
LIMS1P48059 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.65■□□□□ 0.74
LIMS1P48059 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
LIMS1P48059 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
LIMS1P48059 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIMS1P48059 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.64■□□□□ 0.73
LIMS1P48059 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIMS1P48059 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIMS1P48059 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC19.64■□□□□ 0.73
LIMS1P48059 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.64■□□□□ 0.73
LIMS1P48059 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LIMS1P48059 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIMS1P48059 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.64■□□□□ 0.73
LIMS1P48059 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIMS1P48059 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.63■□□□□ 0.73
LIMS1P48059 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMS1P48059 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMS1P48059 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMS1P48059 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMS1P48059 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
LIMS1P48059 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMS1P48059 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC19.63■□□□□ 0.73
LIMS1P48059 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.63■□□□□ 0.73
LIMS1P48059 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMS1P48059 KRT16P3-201ENST00000439127 1283 ntBASIC19.63■□□□□ 0.73
LIMS1P48059 AK3-203ENST00000447596 705 ntTSL 2 BASIC19.63■□□□□ 0.73
LIMS1P48059 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
LIMS1P48059 pRNA.6-201ENST00000610482 90 ntBASIC19.63■□□□□ 0.73
LIMS1P48059 pRNA.5-201ENST00000612139 90 ntBASIC19.63■□□□□ 0.73
LIMS1P48059 pRNA.11-201ENST00000618423 90 ntBASIC19.63■□□□□ 0.73
LIMS1P48059 pRNA.13-201ENST00000619112 90 ntBASIC19.63■□□□□ 0.73
LIMS1P48059 AC068587.7-201ENST00000641602 218 ntBASIC19.63■□□□□ 0.73
LIMS1P48059 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIMS1P48059 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIMS1P48059 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMS1P48059 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMS1P48059 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC19.62■□□□□ 0.73
LIMS1P48059 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
LIMS1P48059 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC19.62■□□□□ 0.73
LIMS1P48059 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMS1P48059 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMS1P48059 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC19.62■□□□□ 0.73
LIMS1P48059 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC19.62■□□□□ 0.73
LIMS1P48059 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC19.62■□□□□ 0.73
LIMS1P48059 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LIMS1P48059 LINC01521-201ENST00000504184 1943 ntBASIC19.62■□□□□ 0.73
LIMS1P48059 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMS1P48059 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMS1P48059 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LIMS1P48059 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
LIMS1P48059 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.61■□□□□ 0.73
LIMS1P48059 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMS1P48059 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMS1P48059 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMS1P48059 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC19.61■□□□□ 0.73
LIMS1P48059 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC19.61■□□□□ 0.73
LIMS1P48059 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC19.61■□□□□ 0.73
LIMS1P48059 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMS1P48059 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMS1P48059 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMS1P48059 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMS1P48059 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC19.61■□□□□ 0.73
LIMS1P48059 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
LIMS1P48059 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMS1P48059 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIMS1P48059 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC19.6■□□□□ 0.73
LIMS1P48059 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIMS1P48059 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.6■□□□□ 0.73
LIMS1P48059 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIMS1P48059 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.6■□□□□ 0.73
LIMS1P48059 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIMS1P48059 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
LIMS1P48059 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIMS1P48059 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIMS1P48059 AL356441.2-201ENST00000443009 864 ntBASIC19.6■□□□□ 0.73
LIMS1P48059 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIMS1P48059 AC099791.2-201ENST00000605725 427 ntBASIC19.6■□□□□ 0.73
LIMS1P48059 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIMS1P48059 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIMS1P48059 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIMS1P48059 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC19.6■□□□□ 0.73
LIMS1P48059 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.6■□□□□ 0.73
LIMS1P48059 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIMS1P48059 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIMS1P48059 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.59■□□□□ 0.73
LIMS1P48059 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIMS1P48059 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms