Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLCF1Q9UBD9 KRT87P-202ENST00000534226 1464 ntBASIC19.17■□□□□ 0.66
CLCF1Q9UBD9 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CLCF1Q9UBD9 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
CLCF1Q9UBD9 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
CLCF1Q9UBD9 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CLCF1Q9UBD9 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC19.17■□□□□ 0.66
CLCF1Q9UBD9 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC19.17■□□□□ 0.66
CLCF1Q9UBD9 TESC-206ENST00000541210 936 ntTSL 3 BASIC19.17■□□□□ 0.66
CLCF1Q9UBD9 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.17■□□□□ 0.66
CLCF1Q9UBD9 AC137761.2-201ENST00000561729 223 ntBASIC19.17■□□□□ 0.66
CLCF1Q9UBD9 AC145350.3-201ENST00000569033 163 ntBASIC19.17■□□□□ 0.66
CLCF1Q9UBD9 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC19.17■□□□□ 0.66
CLCF1Q9UBD9 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLCF1Q9UBD9 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
CLCF1Q9UBD9 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CLCF1Q9UBD9 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLCF1Q9UBD9 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLCF1Q9UBD9 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLCF1Q9UBD9 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLCF1Q9UBD9 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CLCF1Q9UBD9 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CLCF1Q9UBD9 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.16■□□□□ 0.66
CLCF1Q9UBD9 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.16■□□□□ 0.66
CLCF1Q9UBD9 DLX3-202ENST00000512495 834 ntTSL 2 BASIC19.16■□□□□ 0.66
CLCF1Q9UBD9 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.16■□□□□ 0.66
CLCF1Q9UBD9 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.16■□□□□ 0.66
CLCF1Q9UBD9 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLCF1Q9UBD9 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLCF1Q9UBD9 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLCF1Q9UBD9 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CLCF1Q9UBD9 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC19.16■□□□□ 0.66
CLCF1Q9UBD9 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC19.15■□□□□ 0.66
CLCF1Q9UBD9 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLCF1Q9UBD9 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLCF1Q9UBD9 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLCF1Q9UBD9 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
CLCF1Q9UBD9 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLCF1Q9UBD9 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLCF1Q9UBD9 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLCF1Q9UBD9 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.15■□□□□ 0.66
CLCF1Q9UBD9 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.15■□□□□ 0.66
CLCF1Q9UBD9 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
CLCF1Q9UBD9 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
CLCF1Q9UBD9 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLCF1Q9UBD9 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC19.15■□□□□ 0.66
CLCF1Q9UBD9 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
CLCF1Q9UBD9 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CLCF1Q9UBD9 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CLCF1Q9UBD9 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
CLCF1Q9UBD9 AC016769.1-201ENST00000409132 1010 ntBASIC19.14■□□□□ 0.65
CLCF1Q9UBD9 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CLCF1Q9UBD9 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC19.14■□□□□ 0.65
CLCF1Q9UBD9 AC090192.1-201ENST00000517740 490 ntBASIC19.14■□□□□ 0.65
CLCF1Q9UBD9 VPS53-216ENST00000574029 585 ntTSL 4 BASIC19.14■□□□□ 0.65
CLCF1Q9UBD9 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC19.14■□□□□ 0.65
CLCF1Q9UBD9 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
CLCF1Q9UBD9 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC19.14■□□□□ 0.65
CLCF1Q9UBD9 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLCF1Q9UBD9 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.14■□□□□ 0.65
CLCF1Q9UBD9 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC19.14■□□□□ 0.65
CLCF1Q9UBD9 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CLCF1Q9UBD9 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC19.13■□□□□ 0.65
CLCF1Q9UBD9 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CLCF1Q9UBD9 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLCF1Q9UBD9 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
CLCF1Q9UBD9 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC19.13■□□□□ 0.65
CLCF1Q9UBD9 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.13■□□□□ 0.65
CLCF1Q9UBD9 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC19.13■□□□□ 0.65
CLCF1Q9UBD9 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CLCF1Q9UBD9 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLCF1Q9UBD9 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CLCF1Q9UBD9 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
CLCF1Q9UBD9 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLCF1Q9UBD9 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLCF1Q9UBD9 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLCF1Q9UBD9 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CLCF1Q9UBD9 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
CLCF1Q9UBD9 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CLCF1Q9UBD9 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLCF1Q9UBD9 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC19.12■□□□□ 0.65
CLCF1Q9UBD9 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC19.12■□□□□ 0.65
CLCF1Q9UBD9 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLCF1Q9UBD9 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CLCF1Q9UBD9 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.12■□□□□ 0.65
CLCF1Q9UBD9 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.12■□□□□ 0.65
CLCF1Q9UBD9 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.12■□□□□ 0.65
CLCF1Q9UBD9 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.12■□□□□ 0.65
CLCF1Q9UBD9 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLCF1Q9UBD9 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLCF1Q9UBD9 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC19.12■□□□□ 0.65
CLCF1Q9UBD9 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC19.12■□□□□ 0.65
CLCF1Q9UBD9 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC19.12■□□□□ 0.65
CLCF1Q9UBD9 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLCF1Q9UBD9 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
CLCF1Q9UBD9 AC139530.1-201ENST00000575312 1977 ntBASIC19.12■□□□□ 0.65
CLCF1Q9UBD9 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC19.12■□□□□ 0.65
CLCF1Q9UBD9 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CLCF1Q9UBD9 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
CLCF1Q9UBD9 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms