Protein–RNA interactions for Protein: Q9BSH5

HDHD3, Haloacid dehalogenase-like hydrolase domain-containing protein 3, humanhuman

Predicted RBP Predictions only

Length 251 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDHD3Q9BSH5 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDHD3Q9BSH5 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDHD3Q9BSH5 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC18.15■□□□□ 0.5
HDHD3Q9BSH5 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
HDHD3Q9BSH5 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDHD3Q9BSH5 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDHD3Q9BSH5 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDHD3Q9BSH5 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDHD3Q9BSH5 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HDHD3Q9BSH5 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
HDHD3Q9BSH5 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDHD3Q9BSH5 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC18.15■□□□□ 0.5
HDHD3Q9BSH5 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDHD3Q9BSH5 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDHD3Q9BSH5 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC18.15■□□□□ 0.5
HDHD3Q9BSH5 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC18.15■□□□□ 0.5
HDHD3Q9BSH5 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
HDHD3Q9BSH5 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
HDHD3Q9BSH5 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
HDHD3Q9BSH5 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
HDHD3Q9BSH5 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
HDHD3Q9BSH5 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
HDHD3Q9BSH5 CREM-229ENST00000474362 1030 ntTSL 2 BASIC18.14■□□□□ 0.49
HDHD3Q9BSH5 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC18.14■□□□□ 0.49
HDHD3Q9BSH5 MIR6724-1-201ENST00000616420 92 ntBASIC18.14■□□□□ 0.49
HDHD3Q9BSH5 MIR6724-2-201ENST00000616483 92 ntBASIC18.14■□□□□ 0.49
HDHD3Q9BSH5 MIR6724-4-201ENST00000617390 92 ntBASIC18.14■□□□□ 0.49
HDHD3Q9BSH5 MIR6724-3-201ENST00000622482 92 ntBASIC18.14■□□□□ 0.49
HDHD3Q9BSH5 AL031602.1-201ENST00000633169 911 ntBASIC18.14■□□□□ 0.49
HDHD3Q9BSH5 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC18.14■□□□□ 0.49
HDHD3Q9BSH5 TUB-203ENST00000534099 1759 ntTSL 2 BASIC18.14■□□□□ 0.49
HDHD3Q9BSH5 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
HDHD3Q9BSH5 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HDHD3Q9BSH5 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
HDHD3Q9BSH5 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HDHD3Q9BSH5 AC133637.1-201ENST00000624115 1537 ntBASIC18.13■□□□□ 0.49
HDHD3Q9BSH5 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HDHD3Q9BSH5 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC18.13■□□□□ 0.49
HDHD3Q9BSH5 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HDHD3Q9BSH5 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
HDHD3Q9BSH5 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
HDHD3Q9BSH5 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HDHD3Q9BSH5 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HDHD3Q9BSH5 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HDHD3Q9BSH5 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC18.13■□□□□ 0.49
HDHD3Q9BSH5 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
HDHD3Q9BSH5 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC18.13■□□□□ 0.49
HDHD3Q9BSH5 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HDHD3Q9BSH5 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC18.13■□□□□ 0.49
HDHD3Q9BSH5 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HDHD3Q9BSH5 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC18.13■□□□□ 0.49
HDHD3Q9BSH5 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC18.13■□□□□ 0.49
HDHD3Q9BSH5 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC18.13■□□□□ 0.49
HDHD3Q9BSH5 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
HDHD3Q9BSH5 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
HDHD3Q9BSH5 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC18.13■□□□□ 0.49
HDHD3Q9BSH5 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
HDHD3Q9BSH5 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HDHD3Q9BSH5 FEM1AP4-201ENST00000443167 1987 ntBASIC18.12■□□□□ 0.49
HDHD3Q9BSH5 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HDHD3Q9BSH5 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC18.12■□□□□ 0.49
HDHD3Q9BSH5 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
HDHD3Q9BSH5 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HDHD3Q9BSH5 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC18.12■□□□□ 0.49
HDHD3Q9BSH5 pRNA.6-201ENST00000610482 90 ntBASIC18.12■□□□□ 0.49
HDHD3Q9BSH5 pRNA.5-201ENST00000612139 90 ntBASIC18.12■□□□□ 0.49
HDHD3Q9BSH5 pRNA.11-201ENST00000618423 90 ntBASIC18.12■□□□□ 0.49
HDHD3Q9BSH5 pRNA.13-201ENST00000619112 90 ntBASIC18.12■□□□□ 0.49
HDHD3Q9BSH5 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC18.12■□□□□ 0.49
HDHD3Q9BSH5 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HDHD3Q9BSH5 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HDHD3Q9BSH5 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDHD3Q9BSH5 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HDHD3Q9BSH5 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
HDHD3Q9BSH5 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC18.11■□□□□ 0.49
HDHD3Q9BSH5 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC18.11■□□□□ 0.49
HDHD3Q9BSH5 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDHD3Q9BSH5 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDHD3Q9BSH5 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC18.11■□□□□ 0.49
HDHD3Q9BSH5 AC079089.2-201ENST00000531211 1277 ntBASIC18.11■□□□□ 0.49
HDHD3Q9BSH5 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HDHD3Q9BSH5 USP45-205ENST00000472914 1617 ntTSL 5 BASIC18.11■□□□□ 0.49
HDHD3Q9BSH5 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC18.11■□□□□ 0.49
HDHD3Q9BSH5 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HDHD3Q9BSH5 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HDHD3Q9BSH5 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HDHD3Q9BSH5 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDHD3Q9BSH5 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
HDHD3Q9BSH5 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDHD3Q9BSH5 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDHD3Q9BSH5 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC18.1■□□□□ 0.49
HDHD3Q9BSH5 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC18.1■□□□□ 0.49
HDHD3Q9BSH5 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
HDHD3Q9BSH5 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
HDHD3Q9BSH5 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDHD3Q9BSH5 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDHD3Q9BSH5 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDHD3Q9BSH5 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HDHD3Q9BSH5 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDHD3Q9BSH5 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 12.3 ms