Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
KRT39Q6A163 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC23.31■■□□□ 1.32
KRT39Q6A163 MTURN-203ENST00000409688 843 ntTSL 2 BASIC23.31■■□□□ 1.32
KRT39Q6A163 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
KRT39Q6A163 SMUG1P1-201ENST00000590640 811 ntBASIC23.31■■□□□ 1.32
KRT39Q6A163 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC23.31■■□□□ 1.32
KRT39Q6A163 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC23.31■■□□□ 1.32
KRT39Q6A163 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC23.31■■□□□ 1.32
KRT39Q6A163 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC23.31■■□□□ 1.32
KRT39Q6A163 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
KRT39Q6A163 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
KRT39Q6A163 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC23.3■■□□□ 1.32
KRT39Q6A163 EBPL-204ENST00000378272 766 ntTSL 3 BASIC23.3■■□□□ 1.32
KRT39Q6A163 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC23.3■■□□□ 1.32
KRT39Q6A163 LHPP-203ENST00000392757 840 ntTSL 3 BASIC23.3■■□□□ 1.32
KRT39Q6A163 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
KRT39Q6A163 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC23.3■■□□□ 1.32
KRT39Q6A163 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC23.3■■□□□ 1.32
KRT39Q6A163 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
KRT39Q6A163 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
KRT39Q6A163 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
KRT39Q6A163 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
KRT39Q6A163 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
KRT39Q6A163 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC23.3■■□□□ 1.32
KRT39Q6A163 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
KRT39Q6A163 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
KRT39Q6A163 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
KRT39Q6A163 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC23.29■■□□□ 1.32
KRT39Q6A163 FAM99A-202ENST00000538190 1989 ntBASIC23.29■■□□□ 1.32
KRT39Q6A163 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
KRT39Q6A163 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
KRT39Q6A163 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC23.29■■□□□ 1.32
KRT39Q6A163 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC23.29■■□□□ 1.32
KRT39Q6A163 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC23.29■■□□□ 1.32
KRT39Q6A163 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC23.29■■□□□ 1.32
KRT39Q6A163 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
KRT39Q6A163 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
KRT39Q6A163 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
KRT39Q6A163 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
KRT39Q6A163 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
KRT39Q6A163 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
KRT39Q6A163 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC23.28■■□□□ 1.32
KRT39Q6A163 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
KRT39Q6A163 MIR572-201ENST00000384983 95 ntBASIC23.28■■□□□ 1.32
KRT39Q6A163 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
KRT39Q6A163 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
KRT39Q6A163 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC23.28■■□□□ 1.32
KRT39Q6A163 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC23.28■■□□□ 1.32
KRT39Q6A163 AL034346.1-201ENST00000568244 1277 ntBASIC23.28■■□□□ 1.32
KRT39Q6A163 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC23.28■■□□□ 1.32
KRT39Q6A163 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
KRT39Q6A163 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
KRT39Q6A163 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
KRT39Q6A163 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC23.28■■□□□ 1.32
KRT39Q6A163 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
KRT39Q6A163 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC23.28■■□□□ 1.32
KRT39Q6A163 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC23.28■■□□□ 1.32
KRT39Q6A163 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
KRT39Q6A163 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
KRT39Q6A163 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
KRT39Q6A163 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC23.27■■□□□ 1.32
KRT39Q6A163 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC23.27■■□□□ 1.32
KRT39Q6A163 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
KRT39Q6A163 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
KRT39Q6A163 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC23.27■■□□□ 1.32
KRT39Q6A163 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
KRT39Q6A163 AP004607.7-201ENST00000527152 1677 ntBASIC23.27■■□□□ 1.32
KRT39Q6A163 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
KRT39Q6A163 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC23.27■■□□□ 1.32
KRT39Q6A163 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC23.26■■□□□ 1.31
KRT39Q6A163 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
KRT39Q6A163 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
KRT39Q6A163 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
KRT39Q6A163 HYI-206ENST00000372434 1025 ntTSL 5 BASIC23.26■■□□□ 1.31
KRT39Q6A163 AC105233.4-201ENST00000642045 216 ntBASIC23.26■■□□□ 1.31
KRT39Q6A163 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
KRT39Q6A163 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC23.26■■□□□ 1.31
KRT39Q6A163 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
KRT39Q6A163 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC23.26■■□□□ 1.31
KRT39Q6A163 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
KRT39Q6A163 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
KRT39Q6A163 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC23.26■■□□□ 1.31
KRT39Q6A163 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
KRT39Q6A163 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
KRT39Q6A163 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
KRT39Q6A163 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
KRT39Q6A163 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
KRT39Q6A163 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
KRT39Q6A163 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
KRT39Q6A163 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC23.25■■□□□ 1.31
KRT39Q6A163 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
KRT39Q6A163 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
KRT39Q6A163 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC23.24■■□□□ 1.31
KRT39Q6A163 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
KRT39Q6A163 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
KRT39Q6A163 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC23.24■■□□□ 1.31
KRT39Q6A163 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
KRT39Q6A163 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
KRT39Q6A163 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC23.24■■□□□ 1.31
KRT39Q6A163 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms