Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CX3CL1P78423 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CX3CL1P78423 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
CX3CL1P78423 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CX3CL1P78423 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CX3CL1P78423 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC17.3■□□□□ 0.36
CX3CL1P78423 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC17.3■□□□□ 0.36
CX3CL1P78423 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CX3CL1P78423 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CX3CL1P78423 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CX3CL1P78423 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CX3CL1P78423 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CX3CL1P78423 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
CX3CL1P78423 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC17.3■□□□□ 0.36
CX3CL1P78423 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CX3CL1P78423 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC17.29■□□□□ 0.36
CX3CL1P78423 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CX3CL1P78423 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CX3CL1P78423 EDA-201ENST00000338901 1233 ntBASIC17.29■□□□□ 0.36
CX3CL1P78423 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC17.29■□□□□ 0.36
CX3CL1P78423 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CX3CL1P78423 AC233992.3-201ENST00000607491 485 ntBASIC17.29■□□□□ 0.36
CX3CL1P78423 AC087239.1-201ENST00000622671 572 ntBASIC17.29■□□□□ 0.36
CX3CL1P78423 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC17.29■□□□□ 0.36
CX3CL1P78423 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CX3CL1P78423 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CX3CL1P78423 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CX3CL1P78423 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC17.29■□□□□ 0.36
CX3CL1P78423 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
CX3CL1P78423 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CX3CL1P78423 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CX3CL1P78423 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CX3CL1P78423 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
CX3CL1P78423 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CX3CL1P78423 AC242852.2-201ENST00000615738 1807 ntBASIC17.28■□□□□ 0.36
CX3CL1P78423 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
CX3CL1P78423 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
CX3CL1P78423 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CX3CL1P78423 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC17.28■□□□□ 0.36
CX3CL1P78423 AC080038.3-201ENST00000623346 1952 ntBASIC17.28■□□□□ 0.36
CX3CL1P78423 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC17.28■□□□□ 0.36
CX3CL1P78423 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC17.28■□□□□ 0.36
CX3CL1P78423 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC17.28■□□□□ 0.36
CX3CL1P78423 AP005435.1-201ENST00000529293 1178 ntBASIC17.28■□□□□ 0.36
CX3CL1P78423 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC17.28■□□□□ 0.36
CX3CL1P78423 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC17.28■□□□□ 0.36
CX3CL1P78423 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC17.28■□□□□ 0.36
CX3CL1P78423 GRAMD4P4-201ENST00000613563 1115 ntBASIC17.28■□□□□ 0.36
CX3CL1P78423 AL355001.2-201ENST00000620617 1191 ntBASIC17.28■□□□□ 0.36
CX3CL1P78423 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC17.28■□□□□ 0.36
CX3CL1P78423 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC17.28■□□□□ 0.36
CX3CL1P78423 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CX3CL1P78423 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
CX3CL1P78423 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CX3CL1P78423 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CX3CL1P78423 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
CX3CL1P78423 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CX3CL1P78423 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CX3CL1P78423 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC17.27■□□□□ 0.36
CX3CL1P78423 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
CX3CL1P78423 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
CX3CL1P78423 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CX3CL1P78423 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC17.27■□□□□ 0.36
CX3CL1P78423 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CX3CL1P78423 AC133561.4-201ENST00000566112 224 ntBASIC17.27■□□□□ 0.36
CX3CL1P78423 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC17.27■□□□□ 0.36
CX3CL1P78423 AC008764.7-201ENST00000593779 1081 ntBASIC17.27■□□□□ 0.36
CX3CL1P78423 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CX3CL1P78423 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CX3CL1P78423 AL137060.1-201ENST00000618151 2648 ntBASIC17.27■□□□□ 0.35
CX3CL1P78423 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CX3CL1P78423 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.35
CX3CL1P78423 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CX3CL1P78423 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC17.26■□□□□ 0.35
CX3CL1P78423 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CX3CL1P78423 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC17.26■□□□□ 0.35
CX3CL1P78423 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CX3CL1P78423 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
CX3CL1P78423 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CX3CL1P78423 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC17.26■□□□□ 0.35
CX3CL1P78423 AC010141.3-201ENST00000456659 717 ntBASIC17.26■□□□□ 0.35
CX3CL1P78423 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
CX3CL1P78423 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CX3CL1P78423 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC17.26■□□□□ 0.35
CX3CL1P78423 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
CX3CL1P78423 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CX3CL1P78423 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC17.26■□□□□ 0.35
CX3CL1P78423 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CX3CL1P78423 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CX3CL1P78423 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CX3CL1P78423 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CX3CL1P78423 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CX3CL1P78423 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CX3CL1P78423 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CX3CL1P78423 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CX3CL1P78423 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CX3CL1P78423 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC17.25■□□□□ 0.35
CX3CL1P78423 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
CX3CL1P78423 AC126544.1-201ENST00000580842 1059 ntBASIC17.25■□□□□ 0.35
CX3CL1P78423 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 67 ms