Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC30.21■■■□□ 2.43
MSH6P52701 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
MSH6P52701 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
MSH6P52701 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC30.2■■■□□ 2.43
MSH6P52701 PLLP-204ENST00000569059 665 ntTSL 3 BASIC30.2■■■□□ 2.43
MSH6P52701 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC30.2■■■□□ 2.43
MSH6P52701 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC30.2■■■□□ 2.42
MSH6P52701 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
MSH6P52701 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC30.19■■■□□ 2.42
MSH6P52701 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC30.19■■■□□ 2.42
MSH6P52701 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC30.19■■■□□ 2.42
MSH6P52701 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC30.19■■■□□ 2.42
MSH6P52701 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
MSH6P52701 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
MSH6P52701 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC30.19■■■□□ 2.42
MSH6P52701 AP003733.4-201ENST00000623785 1697 ntBASIC30.19■■■□□ 2.42
MSH6P52701 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC30.19■■■□□ 2.42
MSH6P52701 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC30.19■■■□□ 2.42
MSH6P52701 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
MSH6P52701 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
MSH6P52701 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC30.18■■■□□ 2.42
MSH6P52701 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
MSH6P52701 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC30.18■■■□□ 2.42
MSH6P52701 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC30.18■■■□□ 2.42
MSH6P52701 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
MSH6P52701 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC30.18■■■□□ 2.42
MSH6P52701 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC30.18■■■□□ 2.42
MSH6P52701 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC30.18■■■□□ 2.42
MSH6P52701 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
MSH6P52701 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
MSH6P52701 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
MSH6P52701 AC091874.3-201ENST00000512672 1195 ntBASIC30.17■■■□□ 2.42
MSH6P52701 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC30.17■■■□□ 2.42
MSH6P52701 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC30.17■■■□□ 2.42
MSH6P52701 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
MSH6P52701 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC30.17■■■□□ 2.42
MSH6P52701 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
MSH6P52701 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
MSH6P52701 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC30.16■■■□□ 2.42
MSH6P52701 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC30.16■■■□□ 2.42
MSH6P52701 BET1L-207ENST00000529614 560 ntTSL 5 BASIC30.16■■■□□ 2.42
MSH6P52701 CBFB-203ENST00000561924 584 ntTSL 5 BASIC30.16■■■□□ 2.42
MSH6P52701 INO80E-214ENST00000620599 515 ntTSL 2 BASIC30.16■■■□□ 2.42
MSH6P52701 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC30.16■■■□□ 2.42
MSH6P52701 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC30.16■■■□□ 2.42
MSH6P52701 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
MSH6P52701 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
MSH6P52701 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC30.16■■■□□ 2.42
MSH6P52701 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
MSH6P52701 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
MSH6P52701 MIR1224-201ENST00000408193 85 ntBASIC30.15■■■□□ 2.42
MSH6P52701 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC30.15■■■□□ 2.42
MSH6P52701 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC30.15■■■□□ 2.42
MSH6P52701 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
MSH6P52701 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
MSH6P52701 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC30.15■■■□□ 2.42
MSH6P52701 AC026366.1-201ENST00000488803 879 ntBASIC30.15■■■□□ 2.42
MSH6P52701 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC30.15■■■□□ 2.42
MSH6P52701 AC073648.6-201ENST00000641589 218 ntBASIC30.15■■■□□ 2.42
MSH6P52701 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC30.14■■■□□ 2.42
MSH6P52701 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
MSH6P52701 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
MSH6P52701 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC30.14■■■□□ 2.41
MSH6P52701 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC30.14■■■□□ 2.41
MSH6P52701 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC30.14■■■□□ 2.41
MSH6P52701 RHOD-202ENST00000532559 538 ntTSL 3 BASIC30.14■■■□□ 2.41
MSH6P52701 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC30.14■■■□□ 2.41
MSH6P52701 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC30.14■■■□□ 2.41
MSH6P52701 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.41
MSH6P52701 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC30.13■■■□□ 2.41
MSH6P52701 DUSP8P5-201ENST00000422884 1815 ntBASIC30.13■■■□□ 2.41
MSH6P52701 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
MSH6P52701 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
MSH6P52701 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC30.13■■■□□ 2.41
MSH6P52701 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC30.13■■■□□ 2.41
MSH6P52701 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC30.13■■■□□ 2.41
MSH6P52701 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
MSH6P52701 PEX7-202ENST00000367756 680 ntTSL 3 BASIC30.13■■■□□ 2.41
MSH6P52701 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC30.13■■■□□ 2.41
MSH6P52701 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC30.13■■■□□ 2.41
MSH6P52701 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
MSH6P52701 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC30.12■■■□□ 2.41
MSH6P52701 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
MSH6P52701 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC30.12■■■□□ 2.41
MSH6P52701 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
MSH6P52701 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC30.12■■■□□ 2.41
MSH6P52701 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC30.12■■■□□ 2.41
MSH6P52701 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC30.12■■■□□ 2.41
MSH6P52701 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC30.12■■■□□ 2.41
MSH6P52701 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
MSH6P52701 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
MSH6P52701 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC30.11■■■□□ 2.41
MSH6P52701 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC30.11■■■□□ 2.41
MSH6P52701 UNC93B5-201ENST00000530315 699 ntBASIC30.11■■■□□ 2.41
MSH6P52701 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC30.11■■■□□ 2.41
MSH6P52701 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
MSH6P52701 MME-217ENST00000616757 1315 ntTSL 5 BASIC30.11■■■□□ 2.41
MSH6P52701 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC30.1■■■□□ 2.41
MSH6P52701 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC30.1■■■□□ 2.41
MSH6P52701 AP003097.1-201ENST00000530657 1135 ntBASIC30.1■■■□□ 2.41
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms