Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
SIX3O95343 AC244015.2-201ENST00000616358 1861 ntBASIC21.07■□□□□ 0.96
SIX3O95343 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC21.06■□□□□ 0.96
SIX3O95343 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SIX3O95343 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SIX3O95343 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SIX3O95343 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SIX3O95343 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SIX3O95343 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SIX3O95343 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SIX3O95343 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SIX3O95343 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
SIX3O95343 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC21.06■□□□□ 0.96
SIX3O95343 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.05■□□□□ 0.96
SIX3O95343 OR7E47P-201ENST00000546390 1422 ntBASIC21.05■□□□□ 0.96
SIX3O95343 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SIX3O95343 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SIX3O95343 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SIX3O95343 HES6-206ENST00000409574 738 ntTSL 2 BASIC21.05■□□□□ 0.96
SIX3O95343 AC131281.2-201ENST00000520478 145 ntBASIC21.05■□□□□ 0.96
SIX3O95343 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SIX3O95343 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
SIX3O95343 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SIX3O95343 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC21.04■□□□□ 0.96
SIX3O95343 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SIX3O95343 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC21.04■□□□□ 0.96
SIX3O95343 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC21.04■□□□□ 0.96
SIX3O95343 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
SIX3O95343 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
SIX3O95343 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SIX3O95343 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SIX3O95343 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SIX3O95343 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SIX3O95343 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
SIX3O95343 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SIX3O95343 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC21.03■□□□□ 0.96
SIX3O95343 SYT6-210ENST00000641643 1587 ntBASIC21.03■□□□□ 0.96
SIX3O95343 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SIX3O95343 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC21.03■□□□□ 0.96
SIX3O95343 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SIX3O95343 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC21.03■□□□□ 0.96
SIX3O95343 AC068587.7-201ENST00000641602 218 ntBASIC21.03■□□□□ 0.96
SIX3O95343 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SIX3O95343 AC005229.4-201ENST00000610085 2198 ntBASIC21.03■□□□□ 0.96
SIX3O95343 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SIX3O95343 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SIX3O95343 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SIX3O95343 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
SIX3O95343 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SIX3O95343 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC21.02■□□□□ 0.96
SIX3O95343 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
SIX3O95343 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.95
SIX3O95343 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
SIX3O95343 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.01■□□□□ 0.95
SIX3O95343 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SIX3O95343 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.01■□□□□ 0.95
SIX3O95343 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SIX3O95343 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC21.01■□□□□ 0.95
SIX3O95343 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SIX3O95343 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC21.01■□□□□ 0.95
SIX3O95343 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC21.01■□□□□ 0.95
SIX3O95343 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
SIX3O95343 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC21.01■□□□□ 0.95
SIX3O95343 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SIX3O95343 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SIX3O95343 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC21.01■□□□□ 0.95
SIX3O95343 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC21.01■□□□□ 0.95
SIX3O95343 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SIX3O95343 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SIX3O95343 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC21■□□□□ 0.95
SIX3O95343 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SIX3O95343 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC21■□□□□ 0.95
SIX3O95343 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC21■□□□□ 0.95
SIX3O95343 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SIX3O95343 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
SIX3O95343 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
SIX3O95343 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SIX3O95343 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21■□□□□ 0.95
SIX3O95343 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
SIX3O95343 AC010141.3-201ENST00000456659 717 ntBASIC21■□□□□ 0.95
SIX3O95343 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC21■□□□□ 0.95
SIX3O95343 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC21■□□□□ 0.95
SIX3O95343 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC21■□□□□ 0.95
SIX3O95343 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21■□□□□ 0.95
SIX3O95343 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21■□□□□ 0.95
SIX3O95343 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SIX3O95343 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.99■□□□□ 0.95
SIX3O95343 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.99■□□□□ 0.95
SIX3O95343 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.99■□□□□ 0.95
SIX3O95343 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SIX3O95343 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.99■□□□□ 0.95
SIX3O95343 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SIX3O95343 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.99■□□□□ 0.95
SIX3O95343 AL138724.1-201ENST00000606771 1088 ntBASIC20.99■□□□□ 0.95
SIX3O95343 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC20.99■□□□□ 0.95
SIX3O95343 AC087239.1-201ENST00000622671 572 ntBASIC20.99■□□□□ 0.95
SIX3O95343 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
SIX3O95343 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.99■□□□□ 0.95
SIX3O95343 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SIX3O95343 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms