Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.61■□□□□ 0.89
SEMA3DO95025 AC106739.1-201ENST00000617035 715 ntBASIC20.61■□□□□ 0.89
SEMA3DO95025 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.61■□□□□ 0.89
SEMA3DO95025 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.61■□□□□ 0.89
SEMA3DO95025 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SEMA3DO95025 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SEMA3DO95025 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.61■□□□□ 0.89
SEMA3DO95025 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
SEMA3DO95025 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SEMA3DO95025 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SEMA3DO95025 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.61■□□□□ 0.89
SEMA3DO95025 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SEMA3DO95025 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.6■□□□□ 0.89
SEMA3DO95025 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SEMA3DO95025 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
SEMA3DO95025 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SEMA3DO95025 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SEMA3DO95025 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.6■□□□□ 0.89
SEMA3DO95025 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SEMA3DO95025 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SEMA3DO95025 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SEMA3DO95025 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.59■□□□□ 0.89
SEMA3DO95025 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
SEMA3DO95025 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SEMA3DO95025 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SEMA3DO95025 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.59■□□□□ 0.89
SEMA3DO95025 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
SEMA3DO95025 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.59■□□□□ 0.89
SEMA3DO95025 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.59■□□□□ 0.89
SEMA3DO95025 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.59■□□□□ 0.89
SEMA3DO95025 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
SEMA3DO95025 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.59■□□□□ 0.89
SEMA3DO95025 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SEMA3DO95025 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.59■□□□□ 0.89
SEMA3DO95025 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SEMA3DO95025 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.59■□□□□ 0.89
SEMA3DO95025 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SEMA3DO95025 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SEMA3DO95025 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.59■□□□□ 0.89
SEMA3DO95025 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SEMA3DO95025 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SEMA3DO95025 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.59■□□□□ 0.89
SEMA3DO95025 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.59■□□□□ 0.89
SEMA3DO95025 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SEMA3DO95025 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SEMA3DO95025 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SEMA3DO95025 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SEMA3DO95025 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SEMA3DO95025 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SEMA3DO95025 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.58■□□□□ 0.89
SEMA3DO95025 EDA-201ENST00000338901 1233 ntBASIC20.58■□□□□ 0.89
SEMA3DO95025 PBX2P1-201ENST00000493219 1291 ntBASIC20.58■□□□□ 0.89
SEMA3DO95025 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
SEMA3DO95025 AC133561.4-201ENST00000566112 224 ntBASIC20.58■□□□□ 0.89
SEMA3DO95025 AC110285.6-201ENST00000617652 491 ntBASIC20.58■□□□□ 0.89
SEMA3DO95025 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SEMA3DO95025 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SEMA3DO95025 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.57■□□□□ 0.88
SEMA3DO95025 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SEMA3DO95025 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SEMA3DO95025 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SEMA3DO95025 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SEMA3DO95025 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SEMA3DO95025 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SEMA3DO95025 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.57■□□□□ 0.88
SEMA3DO95025 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SEMA3DO95025 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SEMA3DO95025 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SEMA3DO95025 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.57■□□□□ 0.88
SEMA3DO95025 AC027682.1-201ENST00000562846 899 ntBASIC20.57■□□□□ 0.88
SEMA3DO95025 AL034346.1-201ENST00000568244 1277 ntBASIC20.57■□□□□ 0.88
SEMA3DO95025 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.57■□□□□ 0.88
SEMA3DO95025 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.57■□□□□ 0.88
SEMA3DO95025 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SEMA3DO95025 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SEMA3DO95025 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
SEMA3DO95025 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SEMA3DO95025 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SEMA3DO95025 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SEMA3DO95025 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.56■□□□□ 0.88
SEMA3DO95025 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SEMA3DO95025 FAM99A-202ENST00000538190 1989 ntBASIC20.56■□□□□ 0.88
SEMA3DO95025 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.56■□□□□ 0.88
SEMA3DO95025 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SEMA3DO95025 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SEMA3DO95025 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SEMA3DO95025 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.56■□□□□ 0.88
SEMA3DO95025 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.56■□□□□ 0.88
SEMA3DO95025 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SEMA3DO95025 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SEMA3DO95025 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SEMA3DO95025 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.56■□□□□ 0.88
SEMA3DO95025 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SEMA3DO95025 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SEMA3DO95025 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SEMA3DO95025 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.56■□□□□ 0.88
SEMA3DO95025 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.56■□□□□ 0.88
SEMA3DO95025 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SEMA3DO95025 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SEMA3DO95025 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms