Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
UBFD1O14562 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.94■□□□□ 0.94
UBFD1O14562 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
UBFD1O14562 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
UBFD1O14562 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
UBFD1O14562 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
UBFD1O14562 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
UBFD1O14562 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
UBFD1O14562 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
UBFD1O14562 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
UBFD1O14562 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.93■□□□□ 0.94
UBFD1O14562 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.93■□□□□ 0.94
UBFD1O14562 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
UBFD1O14562 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
UBFD1O14562 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
UBFD1O14562 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
UBFD1O14562 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
UBFD1O14562 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.92■□□□□ 0.94
UBFD1O14562 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
UBFD1O14562 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.92■□□□□ 0.94
UBFD1O14562 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
UBFD1O14562 FEM1AP4-201ENST00000443167 1987 ntBASIC20.92■□□□□ 0.94
UBFD1O14562 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.92■□□□□ 0.94
UBFD1O14562 OR2I1P-207ENST00000453522 948 ntBASIC20.92■□□□□ 0.94
UBFD1O14562 AC010525.1-201ENST00000585559 441 ntBASIC20.92■□□□□ 0.94
UBFD1O14562 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
UBFD1O14562 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.92■□□□□ 0.94
UBFD1O14562 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.92■□□□□ 0.94
UBFD1O14562 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
UBFD1O14562 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.92■□□□□ 0.94
UBFD1O14562 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.92■□□□□ 0.94
UBFD1O14562 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
UBFD1O14562 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
UBFD1O14562 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
UBFD1O14562 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
UBFD1O14562 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
UBFD1O14562 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.91■□□□□ 0.94
UBFD1O14562 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.91■□□□□ 0.94
UBFD1O14562 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
UBFD1O14562 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.91■□□□□ 0.94
UBFD1O14562 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
UBFD1O14562 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
UBFD1O14562 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
UBFD1O14562 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.91■□□□□ 0.94
UBFD1O14562 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.9■□□□□ 0.94
UBFD1O14562 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.9■□□□□ 0.94
UBFD1O14562 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
UBFD1O14562 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
UBFD1O14562 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.9■□□□□ 0.94
UBFD1O14562 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
UBFD1O14562 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
UBFD1O14562 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.9■□□□□ 0.94
UBFD1O14562 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
UBFD1O14562 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.89■□□□□ 0.94
UBFD1O14562 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
UBFD1O14562 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.89■□□□□ 0.93
UBFD1O14562 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
UBFD1O14562 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
UBFD1O14562 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
UBFD1O14562 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
UBFD1O14562 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
UBFD1O14562 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.89■□□□□ 0.93
UBFD1O14562 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
UBFD1O14562 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
UBFD1O14562 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
UBFD1O14562 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
UBFD1O14562 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
UBFD1O14562 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.88■□□□□ 0.93
UBFD1O14562 SRD5A1P1-201ENST00000442297 786 ntBASIC20.88■□□□□ 0.93
UBFD1O14562 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.88■□□□□ 0.93
UBFD1O14562 TRIR-205ENST00000592273 783 ntTSL 3 BASIC20.88■□□□□ 0.93
UBFD1O14562 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
UBFD1O14562 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.88■□□□□ 0.93
UBFD1O14562 AC068587.7-201ENST00000641602 218 ntBASIC20.88■□□□□ 0.93
UBFD1O14562 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
UBFD1O14562 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.87■□□□□ 0.93
UBFD1O14562 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
UBFD1O14562 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
UBFD1O14562 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
UBFD1O14562 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.87■□□□□ 0.93
UBFD1O14562 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
UBFD1O14562 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
UBFD1O14562 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
UBFD1O14562 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
UBFD1O14562 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.87■□□□□ 0.93
UBFD1O14562 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
UBFD1O14562 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.87■□□□□ 0.93
UBFD1O14562 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
UBFD1O14562 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
UBFD1O14562 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
UBFD1O14562 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.87■□□□□ 0.93
UBFD1O14562 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.87■□□□□ 0.93
UBFD1O14562 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
UBFD1O14562 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
UBFD1O14562 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
UBFD1O14562 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.86■□□□□ 0.93
UBFD1O14562 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.86■□□□□ 0.93
UBFD1O14562 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
UBFD1O14562 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
UBFD1O14562 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms