Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC17.45■□□□□ 0.38
FOXA2Q9Y261 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
FOXA2Q9Y261 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
FOXA2Q9Y261 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC17.45■□□□□ 0.38
FOXA2Q9Y261 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC17.45■□□□□ 0.38
FOXA2Q9Y261 SF1-220ENST00000626028 704 ntTSL 2 BASIC17.45■□□□□ 0.38
FOXA2Q9Y261 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
FOXA2Q9Y261 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
FOXA2Q9Y261 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC17.45■□□□□ 0.38
FOXA2Q9Y261 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
FOXA2Q9Y261 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
FOXA2Q9Y261 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC17.45■□□□□ 0.38
FOXA2Q9Y261 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
FOXA2Q9Y261 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
FOXA2Q9Y261 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
FOXA2Q9Y261 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
FOXA2Q9Y261 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
FOXA2Q9Y261 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC17.44■□□□□ 0.38
FOXA2Q9Y261 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
FOXA2Q9Y261 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
FOXA2Q9Y261 PTCHD3P2-201ENST00000424937 1205 ntBASIC17.44■□□□□ 0.38
FOXA2Q9Y261 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC17.44■□□□□ 0.38
FOXA2Q9Y261 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
FOXA2Q9Y261 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC17.44■□□□□ 0.38
FOXA2Q9Y261 AL138724.1-201ENST00000606771 1088 ntBASIC17.44■□□□□ 0.38
FOXA2Q9Y261 pRNA.6-201ENST00000610482 90 ntBASIC17.44■□□□□ 0.38
FOXA2Q9Y261 pRNA.5-201ENST00000612139 90 ntBASIC17.44■□□□□ 0.38
FOXA2Q9Y261 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC17.44■□□□□ 0.38
FOXA2Q9Y261 pRNA.11-201ENST00000618423 90 ntBASIC17.44■□□□□ 0.38
FOXA2Q9Y261 pRNA.13-201ENST00000619112 90 ntBASIC17.44■□□□□ 0.38
FOXA2Q9Y261 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
FOXA2Q9Y261 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
FOXA2Q9Y261 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
FOXA2Q9Y261 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
FOXA2Q9Y261 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
FOXA2Q9Y261 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC17.44■□□□□ 0.38
FOXA2Q9Y261 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC17.44■□□□□ 0.38
FOXA2Q9Y261 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
FOXA2Q9Y261 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
FOXA2Q9Y261 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
FOXA2Q9Y261 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC17.43■□□□□ 0.38
FOXA2Q9Y261 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
FOXA2Q9Y261 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC17.43■□□□□ 0.38
FOXA2Q9Y261 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC17.43■□□□□ 0.38
FOXA2Q9Y261 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC17.42■□□□□ 0.38
FOXA2Q9Y261 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
FOXA2Q9Y261 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
FOXA2Q9Y261 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
FOXA2Q9Y261 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
FOXA2Q9Y261 SERBP1P1-201ENST00000396021 1160 ntBASIC17.42■□□□□ 0.38
FOXA2Q9Y261 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC17.42■□□□□ 0.38
FOXA2Q9Y261 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
FOXA2Q9Y261 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC17.42■□□□□ 0.38
FOXA2Q9Y261 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
FOXA2Q9Y261 MIR3181-201ENST00000578512 73 ntBASIC17.42■□□□□ 0.38
FOXA2Q9Y261 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC17.42■□□□□ 0.38
FOXA2Q9Y261 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
FOXA2Q9Y261 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
FOXA2Q9Y261 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
FOXA2Q9Y261 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
FOXA2Q9Y261 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
FOXA2Q9Y261 AL137060.1-201ENST00000618151 2648 ntBASIC17.42■□□□□ 0.38
FOXA2Q9Y261 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
FOXA2Q9Y261 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
FOXA2Q9Y261 GOLGA2P6-201ENST00000340929 2049 ntBASIC17.42■□□□□ 0.38
FOXA2Q9Y261 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.38
FOXA2Q9Y261 GTSE1-AS1-202ENST00000623117 1518 ntBASIC17.42■□□□□ 0.38
FOXA2Q9Y261 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
FOXA2Q9Y261 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
FOXA2Q9Y261 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
FOXA2Q9Y261 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
FOXA2Q9Y261 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
FOXA2Q9Y261 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC17.41■□□□□ 0.38
FOXA2Q9Y261 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
FOXA2Q9Y261 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
FOXA2Q9Y261 AC096631.2-201ENST00000436136 790 ntBASIC17.41■□□□□ 0.38
FOXA2Q9Y261 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC17.41■□□□□ 0.38
FOXA2Q9Y261 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
FOXA2Q9Y261 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
FOXA2Q9Y261 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC17.41■□□□□ 0.38
FOXA2Q9Y261 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
FOXA2Q9Y261 USP48-205ENST00000421625 2818 ntTSL 2 BASIC17.41■□□□□ 0.38
FOXA2Q9Y261 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
FOXA2Q9Y261 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
FOXA2Q9Y261 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
FOXA2Q9Y261 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA2Q9Y261 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
FOXA2Q9Y261 AC026310.3-201ENST00000625186 2373 ntBASIC17.4■□□□□ 0.38
FOXA2Q9Y261 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA2Q9Y261 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
FOXA2Q9Y261 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA2Q9Y261 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
FOXA2Q9Y261 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA2Q9Y261 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA2Q9Y261 AC244015.2-201ENST00000616358 1861 ntBASIC17.4■□□□□ 0.38
FOXA2Q9Y261 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA2Q9Y261 UNC93B3-201ENST00000308076 687 ntBASIC17.4■□□□□ 0.38
FOXA2Q9Y261 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA2Q9Y261 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
FOXA2Q9Y261 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms