Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC22.53■■□□□ 1.2
DDX56Q9NY93 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC22.52■■□□□ 1.2
DDX56Q9NY93 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
DDX56Q9NY93 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
DDX56Q9NY93 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
DDX56Q9NY93 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
DDX56Q9NY93 SF1-220ENST00000626028 704 ntTSL 2 BASIC22.52■■□□□ 1.2
DDX56Q9NY93 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC22.52■■□□□ 1.2
DDX56Q9NY93 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC22.52■■□□□ 1.2
DDX56Q9NY93 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC22.52■■□□□ 1.2
DDX56Q9NY93 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
DDX56Q9NY93 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC22.51■■□□□ 1.19
DDX56Q9NY93 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
DDX56Q9NY93 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC22.51■■□□□ 1.19
DDX56Q9NY93 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
DDX56Q9NY93 AC131281.2-201ENST00000520478 145 ntBASIC22.51■■□□□ 1.19
DDX56Q9NY93 AC010525.1-201ENST00000585559 441 ntBASIC22.51■■□□□ 1.19
DDX56Q9NY93 AC011298.3-201ENST00000615796 283 ntBASIC22.51■■□□□ 1.19
DDX56Q9NY93 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC22.51■■□□□ 1.19
DDX56Q9NY93 AC136469.2-201ENST00000623944 1028 ntBASIC22.51■■□□□ 1.19
DDX56Q9NY93 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC22.51■■□□□ 1.19
DDX56Q9NY93 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC22.51■■□□□ 1.19
DDX56Q9NY93 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
DDX56Q9NY93 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC22.51■■□□□ 1.19
DDX56Q9NY93 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC22.5■■□□□ 1.19
DDX56Q9NY93 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
DDX56Q9NY93 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
DDX56Q9NY93 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
DDX56Q9NY93 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC22.5■■□□□ 1.19
DDX56Q9NY93 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
DDX56Q9NY93 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
DDX56Q9NY93 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
DDX56Q9NY93 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
DDX56Q9NY93 AC007375.3-201ENST00000600936 2314 ntBASIC22.49■■□□□ 1.19
DDX56Q9NY93 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
DDX56Q9NY93 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
DDX56Q9NY93 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC22.49■■□□□ 1.19
DDX56Q9NY93 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC22.49■■□□□ 1.19
DDX56Q9NY93 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
DDX56Q9NY93 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
DDX56Q9NY93 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC22.48■■□□□ 1.19
DDX56Q9NY93 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
DDX56Q9NY93 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
DDX56Q9NY93 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
DDX56Q9NY93 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC22.48■■□□□ 1.19
DDX56Q9NY93 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
DDX56Q9NY93 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC22.48■■□□□ 1.19
DDX56Q9NY93 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
DDX56Q9NY93 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC22.48■■□□□ 1.19
DDX56Q9NY93 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
DDX56Q9NY93 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC22.48■■□□□ 1.19
DDX56Q9NY93 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
DDX56Q9NY93 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
DDX56Q9NY93 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC22.48■■□□□ 1.19
DDX56Q9NY93 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
DDX56Q9NY93 AC244015.2-201ENST00000616358 1861 ntBASIC22.47■■□□□ 1.19
DDX56Q9NY93 OXCT2P1-201ENST00000447263 1535 ntBASIC22.47■■□□□ 1.19
DDX56Q9NY93 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
DDX56Q9NY93 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC22.47■■□□□ 1.19
DDX56Q9NY93 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
DDX56Q9NY93 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC22.47■■□□□ 1.19
DDX56Q9NY93 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
DDX56Q9NY93 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC22.47■■□□□ 1.19
DDX56Q9NY93 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
DDX56Q9NY93 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
DDX56Q9NY93 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
DDX56Q9NY93 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
DDX56Q9NY93 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC22.46■■□□□ 1.19
DDX56Q9NY93 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
DDX56Q9NY93 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC22.46■■□□□ 1.19
DDX56Q9NY93 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
DDX56Q9NY93 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC22.46■■□□□ 1.19
DDX56Q9NY93 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC22.46■■□□□ 1.19
DDX56Q9NY93 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC22.46■■□□□ 1.19
DDX56Q9NY93 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC22.46■■□□□ 1.19
DDX56Q9NY93 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
DDX56Q9NY93 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC22.46■■□□□ 1.19
DDX56Q9NY93 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC22.46■■□□□ 1.19
DDX56Q9NY93 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
DDX56Q9NY93 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
DDX56Q9NY93 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC22.45■■□□□ 1.19
DDX56Q9NY93 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
DDX56Q9NY93 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC22.45■■□□□ 1.18
DDX56Q9NY93 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC22.45■■□□□ 1.18
DDX56Q9NY93 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC22.45■■□□□ 1.18
DDX56Q9NY93 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC22.45■■□□□ 1.18
DDX56Q9NY93 AP005435.1-201ENST00000529293 1178 ntBASIC22.45■■□□□ 1.18
DDX56Q9NY93 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
DDX56Q9NY93 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
DDX56Q9NY93 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC22.45■■□□□ 1.18
DDX56Q9NY93 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC22.45■■□□□ 1.18
DDX56Q9NY93 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
DDX56Q9NY93 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC22.45■■□□□ 1.18
DDX56Q9NY93 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
DDX56Q9NY93 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
DDX56Q9NY93 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
DDX56Q9NY93 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC22.44■■□□□ 1.18
DDX56Q9NY93 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC22.44■■□□□ 1.18
DDX56Q9NY93 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC22.44■■□□□ 1.18
DDX56Q9NY93 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC22.44■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms