Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC18.78■□□□□ 0.6
NKX3-1Q99801 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NKX3-1Q99801 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC18.78■□□□□ 0.6
NKX3-1Q99801 TSPY9P-201ENST00000440215 945 ntBASIC18.78■□□□□ 0.6
NKX3-1Q99801 TSPY11P-201ENST00000442607 1045 ntBASIC18.78■□□□□ 0.6
NKX3-1Q99801 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC18.78■□□□□ 0.6
NKX3-1Q99801 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC18.78■□□□□ 0.6
NKX3-1Q99801 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NKX3-1Q99801 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NKX3-1Q99801 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC18.78■□□□□ 0.6
NKX3-1Q99801 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
NKX3-1Q99801 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NKX3-1Q99801 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
NKX3-1Q99801 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NKX3-1Q99801 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC18.78■□□□□ 0.6
NKX3-1Q99801 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC18.78■□□□□ 0.6
NKX3-1Q99801 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC18.78■□□□□ 0.6
NKX3-1Q99801 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
NKX3-1Q99801 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC18.78■□□□□ 0.6
NKX3-1Q99801 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
NKX3-1Q99801 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
NKX3-1Q99801 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NKX3-1Q99801 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC18.77■□□□□ 0.6
NKX3-1Q99801 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NKX3-1Q99801 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC18.77■□□□□ 0.6
NKX3-1Q99801 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC18.77■□□□□ 0.6
NKX3-1Q99801 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
NKX3-1Q99801 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC18.77■□□□□ 0.6
NKX3-1Q99801 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
NKX3-1Q99801 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NKX3-1Q99801 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC18.77■□□□□ 0.6
NKX3-1Q99801 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
NKX3-1Q99801 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
NKX3-1Q99801 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
NKX3-1Q99801 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
NKX3-1Q99801 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
NKX3-1Q99801 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
NKX3-1Q99801 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC18.77■□□□□ 0.59
NKX3-1Q99801 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC18.77■□□□□ 0.59
NKX3-1Q99801 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
NKX3-1Q99801 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC18.76■□□□□ 0.59
NKX3-1Q99801 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
NKX3-1Q99801 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
NKX3-1Q99801 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NKX3-1Q99801 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
NKX3-1Q99801 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
NKX3-1Q99801 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC18.76■□□□□ 0.59
NKX3-1Q99801 MTDHP2-201ENST00000601468 714 ntBASIC18.76■□□□□ 0.59
NKX3-1Q99801 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NKX3-1Q99801 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
NKX3-1Q99801 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
NKX3-1Q99801 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NKX3-1Q99801 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
NKX3-1Q99801 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
NKX3-1Q99801 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NKX3-1Q99801 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NKX3-1Q99801 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC18.76■□□□□ 0.59
NKX3-1Q99801 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
NKX3-1Q99801 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
NKX3-1Q99801 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
NKX3-1Q99801 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
NKX3-1Q99801 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC18.75■□□□□ 0.59
NKX3-1Q99801 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC18.75■□□□□ 0.59
NKX3-1Q99801 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
NKX3-1Q99801 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
NKX3-1Q99801 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
NKX3-1Q99801 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
NKX3-1Q99801 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC18.74■□□□□ 0.59
NKX3-1Q99801 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NKX3-1Q99801 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC18.74■□□□□ 0.59
NKX3-1Q99801 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
NKX3-1Q99801 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NKX3-1Q99801 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
NKX3-1Q99801 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
NKX3-1Q99801 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
NKX3-1Q99801 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
NKX3-1Q99801 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NKX3-1Q99801 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NKX3-1Q99801 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
NKX3-1Q99801 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
NKX3-1Q99801 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NKX3-1Q99801 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NKX3-1Q99801 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
NKX3-1Q99801 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NKX3-1Q99801 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC18.74■□□□□ 0.59
NKX3-1Q99801 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
NKX3-1Q99801 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC18.73■□□□□ 0.59
NKX3-1Q99801 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
NKX3-1Q99801 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
NKX3-1Q99801 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
NKX3-1Q99801 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC18.73■□□□□ 0.59
NKX3-1Q99801 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
NKX3-1Q99801 AL356441.2-201ENST00000443009 864 ntBASIC18.73■□□□□ 0.59
NKX3-1Q99801 CREM-229ENST00000474362 1030 ntTSL 2 BASIC18.73■□□□□ 0.59
NKX3-1Q99801 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC18.73■□□□□ 0.59
NKX3-1Q99801 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
NKX3-1Q99801 GRAMD4P7-201ENST00000578182 1232 ntBASIC18.73■□□□□ 0.59
NKX3-1Q99801 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
NKX3-1Q99801 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC18.73■□□□□ 0.59
NKX3-1Q99801 SLC25A24-204ENST00000569674 2357 ntBASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 11.4 ms