Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LMX1AQ8TE12 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LMX1AQ8TE12 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LMX1AQ8TE12 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LMX1AQ8TE12 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LMX1AQ8TE12 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LMX1AQ8TE12 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
LMX1AQ8TE12 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.12■□□□□ 0.97
LMX1AQ8TE12 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LMX1AQ8TE12 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LMX1AQ8TE12 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
LMX1AQ8TE12 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC21.12■□□□□ 0.97
LMX1AQ8TE12 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC21.12■□□□□ 0.97
LMX1AQ8TE12 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC21.12■□□□□ 0.97
LMX1AQ8TE12 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LMX1AQ8TE12 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.12■□□□□ 0.97
LMX1AQ8TE12 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
LMX1AQ8TE12 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
LMX1AQ8TE12 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LMX1AQ8TE12 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC21.11■□□□□ 0.97
LMX1AQ8TE12 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LMX1AQ8TE12 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.11■□□□□ 0.97
LMX1AQ8TE12 AC006970.2-201ENST00000450065 779 ntBASIC21.11■□□□□ 0.97
LMX1AQ8TE12 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC21.11■□□□□ 0.97
LMX1AQ8TE12 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LMX1AQ8TE12 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
LMX1AQ8TE12 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.1■□□□□ 0.97
LMX1AQ8TE12 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
LMX1AQ8TE12 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC21.1■□□□□ 0.97
LMX1AQ8TE12 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LMX1AQ8TE12 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
LMX1AQ8TE12 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
LMX1AQ8TE12 THRA-202ENST00000394121 2260 ntTSL 2 BASIC21.1■□□□□ 0.97
LMX1AQ8TE12 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.1■□□□□ 0.97
LMX1AQ8TE12 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LMX1AQ8TE12 METTL26-203ENST00000397664 604 ntTSL 2 BASIC21.1■□□□□ 0.97
LMX1AQ8TE12 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LMX1AQ8TE12 PPP1R14BP3-201ENST00000509033 445 ntBASIC21.1■□□□□ 0.97
LMX1AQ8TE12 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC21.1■□□□□ 0.97
LMX1AQ8TE12 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
LMX1AQ8TE12 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
LMX1AQ8TE12 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
LMX1AQ8TE12 DUSP8P5-201ENST00000422884 1815 ntBASIC21.1■□□□□ 0.97
LMX1AQ8TE12 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LMX1AQ8TE12 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
LMX1AQ8TE12 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
LMX1AQ8TE12 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
LMX1AQ8TE12 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LMX1AQ8TE12 AP004607.7-201ENST00000527152 1677 ntBASIC21.09■□□□□ 0.97
LMX1AQ8TE12 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LMX1AQ8TE12 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC21.09■□□□□ 0.97
LMX1AQ8TE12 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC21.09■□□□□ 0.97
LMX1AQ8TE12 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
LMX1AQ8TE12 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LMX1AQ8TE12 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
LMX1AQ8TE12 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LMX1AQ8TE12 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
LMX1AQ8TE12 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
LMX1AQ8TE12 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
LMX1AQ8TE12 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
LMX1AQ8TE12 DENND3-207ENST00000518347 850 ntTSL 2 BASIC21.08■□□□□ 0.97
LMX1AQ8TE12 OR7E47P-201ENST00000546390 1422 ntBASIC21.08■□□□□ 0.97
LMX1AQ8TE12 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC21.08■□□□□ 0.97
LMX1AQ8TE12 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC21.08■□□□□ 0.96
LMX1AQ8TE12 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
LMX1AQ8TE12 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.08■□□□□ 0.96
LMX1AQ8TE12 MFF-207ENST00000409565 1548 ntTSL 2 BASIC21.08■□□□□ 0.96
LMX1AQ8TE12 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LMX1AQ8TE12 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
LMX1AQ8TE12 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LMX1AQ8TE12 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC21.07■□□□□ 0.96
LMX1AQ8TE12 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC21.07■□□□□ 0.96
LMX1AQ8TE12 CROCCP5-201ENST00000436658 830 ntBASIC21.07■□□□□ 0.96
LMX1AQ8TE12 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
LMX1AQ8TE12 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC21.07■□□□□ 0.96
LMX1AQ8TE12 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC21.07■□□□□ 0.96
LMX1AQ8TE12 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LMX1AQ8TE12 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LMX1AQ8TE12 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
LMX1AQ8TE12 AC055733.4-201ENST00000638462 1354 ntBASIC21.07■□□□□ 0.96
LMX1AQ8TE12 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.07■□□□□ 0.96
LMX1AQ8TE12 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LMX1AQ8TE12 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
LMX1AQ8TE12 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LMX1AQ8TE12 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LMX1AQ8TE12 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
LMX1AQ8TE12 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC21.06■□□□□ 0.96
LMX1AQ8TE12 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
LMX1AQ8TE12 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC21.06■□□□□ 0.96
LMX1AQ8TE12 MDK-213ENST00000617138 635 ntTSL 2 BASIC21.06■□□□□ 0.96
LMX1AQ8TE12 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LMX1AQ8TE12 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC21.06■□□□□ 0.96
LMX1AQ8TE12 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.06■□□□□ 0.96
LMX1AQ8TE12 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC21.05■□□□□ 0.96
LMX1AQ8TE12 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC21.05■□□□□ 0.96
LMX1AQ8TE12 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.05■□□□□ 0.96
LMX1AQ8TE12 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LMX1AQ8TE12 MAP2K4P1-201ENST00000438453 1195 ntBASIC21.05■□□□□ 0.96
LMX1AQ8TE12 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
LMX1AQ8TE12 MFSD11-216ENST00000590393 1141 ntBASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms