Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
BEST3Q8N1M1 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
BEST3Q8N1M1 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
BEST3Q8N1M1 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC20.03■□□□□ 0.8
BEST3Q8N1M1 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
BEST3Q8N1M1 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC20.03■□□□□ 0.8
BEST3Q8N1M1 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
BEST3Q8N1M1 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
BEST3Q8N1M1 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
BEST3Q8N1M1 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
BEST3Q8N1M1 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
BEST3Q8N1M1 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
BEST3Q8N1M1 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
BEST3Q8N1M1 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
BEST3Q8N1M1 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC20.02■□□□□ 0.8
BEST3Q8N1M1 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
BEST3Q8N1M1 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
BEST3Q8N1M1 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
BEST3Q8N1M1 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC20.02■□□□□ 0.8
BEST3Q8N1M1 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC20.02■□□□□ 0.8
BEST3Q8N1M1 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC20.02■□□□□ 0.8
BEST3Q8N1M1 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
BEST3Q8N1M1 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC20.02■□□□□ 0.8
BEST3Q8N1M1 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC20.02■□□□□ 0.8
BEST3Q8N1M1 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
BEST3Q8N1M1 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
BEST3Q8N1M1 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
BEST3Q8N1M1 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.02■□□□□ 0.8
BEST3Q8N1M1 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
BEST3Q8N1M1 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
BEST3Q8N1M1 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
BEST3Q8N1M1 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC20.02■□□□□ 0.79
BEST3Q8N1M1 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC20.02■□□□□ 0.79
BEST3Q8N1M1 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.01■□□□□ 0.79
BEST3Q8N1M1 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
BEST3Q8N1M1 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
BEST3Q8N1M1 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20.01■□□□□ 0.79
BEST3Q8N1M1 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC20.01■□□□□ 0.79
BEST3Q8N1M1 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
BEST3Q8N1M1 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
BEST3Q8N1M1 LINC01960-201ENST00000563759 1884 ntBASIC20.01■□□□□ 0.79
BEST3Q8N1M1 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
BEST3Q8N1M1 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC20■□□□□ 0.79
BEST3Q8N1M1 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
BEST3Q8N1M1 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20■□□□□ 0.79
BEST3Q8N1M1 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20■□□□□ 0.79
BEST3Q8N1M1 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20■□□□□ 0.79
BEST3Q8N1M1 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC20■□□□□ 0.79
BEST3Q8N1M1 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC20■□□□□ 0.79
BEST3Q8N1M1 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC20■□□□□ 0.79
BEST3Q8N1M1 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
BEST3Q8N1M1 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
BEST3Q8N1M1 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20■□□□□ 0.79
BEST3Q8N1M1 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
BEST3Q8N1M1 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
BEST3Q8N1M1 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
BEST3Q8N1M1 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC20■□□□□ 0.79
BEST3Q8N1M1 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
BEST3Q8N1M1 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
BEST3Q8N1M1 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC19.99■□□□□ 0.79
BEST3Q8N1M1 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
BEST3Q8N1M1 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
BEST3Q8N1M1 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
BEST3Q8N1M1 ASL-203ENST00000380839 1765 ntTSL 5 BASIC19.99■□□□□ 0.79
BEST3Q8N1M1 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC19.99■□□□□ 0.79
BEST3Q8N1M1 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC19.99■□□□□ 0.79
BEST3Q8N1M1 AC004911.1-201ENST00000416316 871 ntBASIC19.99■□□□□ 0.79
BEST3Q8N1M1 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC19.99■□□□□ 0.79
BEST3Q8N1M1 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC19.99■□□□□ 0.79
BEST3Q8N1M1 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC19.99■□□□□ 0.79
BEST3Q8N1M1 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC19.99■□□□□ 0.79
BEST3Q8N1M1 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.99■□□□□ 0.79
BEST3Q8N1M1 KRT18P61-201ENST00000585825 1298 ntBASIC19.99■□□□□ 0.79
BEST3Q8N1M1 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
BEST3Q8N1M1 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
BEST3Q8N1M1 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
BEST3Q8N1M1 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
BEST3Q8N1M1 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC19.98■□□□□ 0.79
BEST3Q8N1M1 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
BEST3Q8N1M1 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
BEST3Q8N1M1 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC19.98■□□□□ 0.79
BEST3Q8N1M1 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
BEST3Q8N1M1 COX20-201ENST00000366528 568 ntTSL 2 BASIC19.98■□□□□ 0.79
BEST3Q8N1M1 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC19.98■□□□□ 0.79
BEST3Q8N1M1 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC19.98■□□□□ 0.79
BEST3Q8N1M1 RARRES2P11-201ENST00000635158 484 ntBASIC19.98■□□□□ 0.79
BEST3Q8N1M1 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC19.98■□□□□ 0.79
BEST3Q8N1M1 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
BEST3Q8N1M1 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC19.98■□□□□ 0.79
BEST3Q8N1M1 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
BEST3Q8N1M1 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
BEST3Q8N1M1 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
BEST3Q8N1M1 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
BEST3Q8N1M1 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.97■□□□□ 0.79
BEST3Q8N1M1 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC19.97■□□□□ 0.79
BEST3Q8N1M1 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC19.97■□□□□ 0.79
BEST3Q8N1M1 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC19.97■□□□□ 0.79
BEST3Q8N1M1 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.97■□□□□ 0.79
BEST3Q8N1M1 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC19.97■□□□□ 0.79
BEST3Q8N1M1 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms