Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 HLA-L-209ENST00000420110 1011 ntBASIC19.54■□□□□ 0.72
RNFT1Q5M7Z0 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RNFT1Q5M7Z0 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RNFT1Q5M7Z0 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.54■□□□□ 0.72
RNFT1Q5M7Z0 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC19.54■□□□□ 0.72
RNFT1Q5M7Z0 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RNFT1Q5M7Z0 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RNFT1Q5M7Z0 KRT87P-202ENST00000534226 1464 ntBASIC19.54■□□□□ 0.72
RNFT1Q5M7Z0 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RNFT1Q5M7Z0 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RNFT1Q5M7Z0 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RNFT1Q5M7Z0 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
RNFT1Q5M7Z0 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
RNFT1Q5M7Z0 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC19.53■□□□□ 0.72
RNFT1Q5M7Z0 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC19.53■□□□□ 0.72
RNFT1Q5M7Z0 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.53■□□□□ 0.72
RNFT1Q5M7Z0 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RNFT1Q5M7Z0 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.53■□□□□ 0.72
RNFT1Q5M7Z0 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC19.53■□□□□ 0.72
RNFT1Q5M7Z0 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RNFT1Q5M7Z0 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC19.53■□□□□ 0.72
RNFT1Q5M7Z0 GXYLT1P5-201ENST00000614548 1189 ntBASIC19.53■□□□□ 0.72
RNFT1Q5M7Z0 AC011767.1-201ENST00000617410 1153 ntBASIC19.53■□□□□ 0.72
RNFT1Q5M7Z0 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC19.53■□□□□ 0.72
RNFT1Q5M7Z0 AC055733.4-201ENST00000638462 1354 ntBASIC19.53■□□□□ 0.72
RNFT1Q5M7Z0 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC19.53■□□□□ 0.72
RNFT1Q5M7Z0 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC19.53■□□□□ 0.72
RNFT1Q5M7Z0 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RNFT1Q5M7Z0 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
RNFT1Q5M7Z0 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
RNFT1Q5M7Z0 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
RNFT1Q5M7Z0 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
RNFT1Q5M7Z0 AC026185.1-201ENST00000445748 174 ntBASIC19.52■□□□□ 0.72
RNFT1Q5M7Z0 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC19.52■□□□□ 0.72
RNFT1Q5M7Z0 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC19.52■□□□□ 0.72
RNFT1Q5M7Z0 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
RNFT1Q5M7Z0 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RNFT1Q5M7Z0 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RNFT1Q5M7Z0 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.71
RNFT1Q5M7Z0 LINC00526-201ENST00000581067 1875 ntBASIC19.52■□□□□ 0.71
RNFT1Q5M7Z0 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
RNFT1Q5M7Z0 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
RNFT1Q5M7Z0 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
RNFT1Q5M7Z0 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC19.51■□□□□ 0.71
RNFT1Q5M7Z0 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RNFT1Q5M7Z0 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RNFT1Q5M7Z0 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RNFT1Q5M7Z0 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RNFT1Q5M7Z0 DENND3-207ENST00000518347 850 ntTSL 2 BASIC19.51■□□□□ 0.71
RNFT1Q5M7Z0 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
RNFT1Q5M7Z0 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
RNFT1Q5M7Z0 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RNFT1Q5M7Z0 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC19.51■□□□□ 0.71
RNFT1Q5M7Z0 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
RNFT1Q5M7Z0 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
RNFT1Q5M7Z0 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
RNFT1Q5M7Z0 AP004607.7-201ENST00000527152 1677 ntBASIC19.5■□□□□ 0.71
RNFT1Q5M7Z0 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
RNFT1Q5M7Z0 CROCCP5-201ENST00000436658 830 ntBASIC19.5■□□□□ 0.71
RNFT1Q5M7Z0 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
RNFT1Q5M7Z0 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RNFT1Q5M7Z0 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.5■□□□□ 0.71
RNFT1Q5M7Z0 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RNFT1Q5M7Z0 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
RNFT1Q5M7Z0 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
RNFT1Q5M7Z0 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
RNFT1Q5M7Z0 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
RNFT1Q5M7Z0 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
RNFT1Q5M7Z0 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RNFT1Q5M7Z0 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.49■□□□□ 0.71
RNFT1Q5M7Z0 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RNFT1Q5M7Z0 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC19.49■□□□□ 0.71
RNFT1Q5M7Z0 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC19.49■□□□□ 0.71
RNFT1Q5M7Z0 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC19.49■□□□□ 0.71
RNFT1Q5M7Z0 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RNFT1Q5M7Z0 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
RNFT1Q5M7Z0 KRT18P11-201ENST00000435214 1283 ntBASIC19.49■□□□□ 0.71
RNFT1Q5M7Z0 PPP1R14BP3-201ENST00000509033 445 ntBASIC19.49■□□□□ 0.71
RNFT1Q5M7Z0 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
RNFT1Q5M7Z0 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RNFT1Q5M7Z0 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
RNFT1Q5M7Z0 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RNFT1Q5M7Z0 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
RNFT1Q5M7Z0 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RNFT1Q5M7Z0 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.48■□□□□ 0.71
RNFT1Q5M7Z0 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC19.48■□□□□ 0.71
RNFT1Q5M7Z0 MAP2K4P1-201ENST00000438453 1195 ntBASIC19.48■□□□□ 0.71
RNFT1Q5M7Z0 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC19.48■□□□□ 0.71
RNFT1Q5M7Z0 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC19.48■□□□□ 0.71
RNFT1Q5M7Z0 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
RNFT1Q5M7Z0 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
RNFT1Q5M7Z0 MFSD11-216ENST00000590393 1141 ntBASIC19.48■□□□□ 0.71
RNFT1Q5M7Z0 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
RNFT1Q5M7Z0 OR7E47P-201ENST00000546390 1422 ntBASIC19.48■□□□□ 0.71
RNFT1Q5M7Z0 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.48■□□□□ 0.71
RNFT1Q5M7Z0 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC19.48■□□□□ 0.71
RNFT1Q5M7Z0 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RNFT1Q5M7Z0 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC19.48■□□□□ 0.71
RNFT1Q5M7Z0 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
RNFT1Q5M7Z0 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms