Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PTCHD3Q3KNS1 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC21.13■□□□□ 0.97
PTCHD3Q3KNS1 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.13■□□□□ 0.97
PTCHD3Q3KNS1 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
PTCHD3Q3KNS1 LINC00565-201ENST00000562710 2331 ntBASIC21.12■□□□□ 0.97
PTCHD3Q3KNS1 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
PTCHD3Q3KNS1 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
PTCHD3Q3KNS1 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PTCHD3Q3KNS1 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.12■□□□□ 0.97
PTCHD3Q3KNS1 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
PTCHD3Q3KNS1 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC21.12■□□□□ 0.97
PTCHD3Q3KNS1 RHOF-204ENST00000537265 699 ntTSL 2 BASIC21.12■□□□□ 0.97
PTCHD3Q3KNS1 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
PTCHD3Q3KNS1 MPST-208ENST00000628507 698 ntTSL 5 BASIC21.12■□□□□ 0.97
PTCHD3Q3KNS1 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.12■□□□□ 0.97
PTCHD3Q3KNS1 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
PTCHD3Q3KNS1 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.12■□□□□ 0.97
PTCHD3Q3KNS1 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC21.12■□□□□ 0.97
PTCHD3Q3KNS1 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PTCHD3Q3KNS1 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PTCHD3Q3KNS1 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PTCHD3Q3KNS1 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PTCHD3Q3KNS1 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC21.11■□□□□ 0.97
PTCHD3Q3KNS1 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC21.11■□□□□ 0.97
PTCHD3Q3KNS1 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
PTCHD3Q3KNS1 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
PTCHD3Q3KNS1 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
PTCHD3Q3KNS1 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC21.11■□□□□ 0.97
PTCHD3Q3KNS1 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PTCHD3Q3KNS1 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
PTCHD3Q3KNS1 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
PTCHD3Q3KNS1 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC21.11■□□□□ 0.97
PTCHD3Q3KNS1 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PTCHD3Q3KNS1 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PTCHD3Q3KNS1 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PTCHD3Q3KNS1 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC21.1■□□□□ 0.97
PTCHD3Q3KNS1 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PTCHD3Q3KNS1 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PTCHD3Q3KNS1 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PTCHD3Q3KNS1 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PTCHD3Q3KNS1 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
PTCHD3Q3KNS1 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PTCHD3Q3KNS1 IRS3P-201ENST00000223076 1006 ntBASIC21.1■□□□□ 0.97
PTCHD3Q3KNS1 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PTCHD3Q3KNS1 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PTCHD3Q3KNS1 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PTCHD3Q3KNS1 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
PTCHD3Q3KNS1 CLDN5-201ENST00000403084 2357 ntBASIC21.09■□□□□ 0.97
PTCHD3Q3KNS1 C11orf96-202ENST00000528572 1834 ntBASIC21.09■□□□□ 0.97
PTCHD3Q3KNS1 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PTCHD3Q3KNS1 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC21.09■□□□□ 0.97
PTCHD3Q3KNS1 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC21.09■□□□□ 0.97
PTCHD3Q3KNS1 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PTCHD3Q3KNS1 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PTCHD3Q3KNS1 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.09■□□□□ 0.97
PTCHD3Q3KNS1 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PTCHD3Q3KNS1 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
PTCHD3Q3KNS1 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PTCHD3Q3KNS1 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
PTCHD3Q3KNS1 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PTCHD3Q3KNS1 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PTCHD3Q3KNS1 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PTCHD3Q3KNS1 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC21.08■□□□□ 0.97
PTCHD3Q3KNS1 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC21.08■□□□□ 0.97
PTCHD3Q3KNS1 AC079089.2-201ENST00000531211 1277 ntBASIC21.08■□□□□ 0.97
PTCHD3Q3KNS1 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC21.08■□□□□ 0.97
PTCHD3Q3KNS1 AC087239.1-201ENST00000622671 572 ntBASIC21.08■□□□□ 0.97
PTCHD3Q3KNS1 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
PTCHD3Q3KNS1 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
PTCHD3Q3KNS1 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PTCHD3Q3KNS1 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
PTCHD3Q3KNS1 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PTCHD3Q3KNS1 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PTCHD3Q3KNS1 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PTCHD3Q3KNS1 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PTCHD3Q3KNS1 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
PTCHD3Q3KNS1 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PTCHD3Q3KNS1 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.07■□□□□ 0.96
PTCHD3Q3KNS1 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.07■□□□□ 0.96
PTCHD3Q3KNS1 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PTCHD3Q3KNS1 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PTCHD3Q3KNS1 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC21.07■□□□□ 0.96
PTCHD3Q3KNS1 AC010141.3-201ENST00000456659 717 ntBASIC21.07■□□□□ 0.96
PTCHD3Q3KNS1 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC21.07■□□□□ 0.96
PTCHD3Q3KNS1 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC21.07■□□□□ 0.96
PTCHD3Q3KNS1 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
PTCHD3Q3KNS1 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.07■□□□□ 0.96
PTCHD3Q3KNS1 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
PTCHD3Q3KNS1 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PTCHD3Q3KNS1 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
PTCHD3Q3KNS1 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
PTCHD3Q3KNS1 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
PTCHD3Q3KNS1 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
PTCHD3Q3KNS1 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PTCHD3Q3KNS1 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
PTCHD3Q3KNS1 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
PTCHD3Q3KNS1 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
PTCHD3Q3KNS1 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PTCHD3Q3KNS1 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC21.06■□□□□ 0.96
PTCHD3Q3KNS1 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms