Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
COL7A1Q02388 IRX5-204ENST00000560154 879 ntTSL 5 BASIC15.7■□□□□ 0.1
COL7A1Q02388 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC15.7■□□□□ 0.1
COL7A1Q02388 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL7A1Q02388 AC013268.1-206ENST00000638368 961 ntBASIC15.7■□□□□ 0.1
COL7A1Q02388 AC112229.1-201ENST00000639295 961 ntBASIC15.7■□□□□ 0.1
COL7A1Q02388 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC15.7■□□□□ 0.1
COL7A1Q02388 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL7A1Q02388 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC15.69■□□□□ 0.1
COL7A1Q02388 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC15.69■□□□□ 0.1
COL7A1Q02388 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC15.69■□□□□ 0.1
COL7A1Q02388 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL7A1Q02388 AC142381.4-202ENST00000563973 229 ntBASIC15.69■□□□□ 0.1
COL7A1Q02388 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC15.69■□□□□ 0.1
COL7A1Q02388 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL7A1Q02388 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC15.69■□□□□ 0.1
COL7A1Q02388 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL7A1Q02388 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL7A1Q02388 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL7A1Q02388 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
COL7A1Q02388 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
COL7A1Q02388 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL7A1Q02388 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC15.68■□□□□ 0.1
COL7A1Q02388 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL7A1Q02388 AC079630.1-202ENST00000618127 1840 ntBASIC15.68■□□□□ 0.1
COL7A1Q02388 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL7A1Q02388 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL7A1Q02388 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL7A1Q02388 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL7A1Q02388 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL7A1Q02388 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC15.68■□□□□ 0.1
COL7A1Q02388 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC15.68■□□□□ 0.1
COL7A1Q02388 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC15.68■□□□□ 0.1
COL7A1Q02388 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL7A1Q02388 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC15.68■□□□□ 0.1
COL7A1Q02388 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC15.68■□□□□ 0.1
COL7A1Q02388 GAS7-202ENST00000396115 929 ntTSL 5 BASIC15.67■□□□□ 0.1
COL7A1Q02388 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC15.67■□□□□ 0.1
COL7A1Q02388 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC15.67■□□□□ 0.1
COL7A1Q02388 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL7A1Q02388 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC15.67■□□□□ 0.1
COL7A1Q02388 AC073648.6-201ENST00000641589 218 ntBASIC15.67■□□□□ 0.1
COL7A1Q02388 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL7A1Q02388 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL7A1Q02388 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
COL7A1Q02388 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL7A1Q02388 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL7A1Q02388 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
COL7A1Q02388 BAALC-201ENST00000297574 801 ntTSL 3 BASIC15.67■□□□□ 0.1
COL7A1Q02388 ESRRAP1-201ENST00000400596 1257 ntBASIC15.67■□□□□ 0.1
COL7A1Q02388 BX276092.2-201ENST00000417668 665 ntBASIC15.67■□□□□ 0.1
COL7A1Q02388 UNC93B5-201ENST00000530315 699 ntBASIC15.67■□□□□ 0.1
COL7A1Q02388 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL7A1Q02388 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL7A1Q02388 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC15.66■□□□□ 0.1
COL7A1Q02388 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL7A1Q02388 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL7A1Q02388 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL7A1Q02388 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL7A1Q02388 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL7A1Q02388 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL7A1Q02388 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL7A1Q02388 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL7A1Q02388 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL7A1Q02388 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL7A1Q02388 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL7A1Q02388 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
COL7A1Q02388 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL7A1Q02388 BET1L-204ENST00000410108 637 ntTSL 3 BASIC15.65■□□□□ 0.1
COL7A1Q02388 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC15.65■□□□□ 0.1
COL7A1Q02388 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC15.65■□□□□ 0.1
COL7A1Q02388 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC15.65■□□□□ 0.1
COL7A1Q02388 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC15.65■□□□□ 0.1
COL7A1Q02388 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC15.65■□□□□ 0.1
COL7A1Q02388 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC15.65■□□□□ 0.1
COL7A1Q02388 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL7A1Q02388 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC15.65■□□□□ 0.1
COL7A1Q02388 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL7A1Q02388 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
COL7A1Q02388 FAM210CP-201ENST00000445714 574 ntBASIC15.64■□□□□ 0.09
COL7A1Q02388 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC15.64■□□□□ 0.09
COL7A1Q02388 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC15.64■□□□□ 0.09
COL7A1Q02388 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
COL7A1Q02388 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC15.64■□□□□ 0.09
COL7A1Q02388 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL7A1Q02388 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC15.64■□□□□ 0.09
COL7A1Q02388 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL7A1Q02388 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL7A1Q02388 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL7A1Q02388 AC026366.1-201ENST00000488803 879 ntBASIC15.64■□□□□ 0.09
COL7A1Q02388 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC15.63■□□□□ 0.09
COL7A1Q02388 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL7A1Q02388 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC15.63■□□□□ 0.09
COL7A1Q02388 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
COL7A1Q02388 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL7A1Q02388 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC15.63■□□□□ 0.09
COL7A1Q02388 SERP1-208ENST00000491660 830 ntTSL 2 BASIC15.63■□□□□ 0.09
COL7A1Q02388 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC15.63■□□□□ 0.09
COL7A1Q02388 OR10C1-204ENST00000622521 1039 ntBASIC15.63■□□□□ 0.09
COL7A1Q02388 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms