Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
RNF4P78317 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
RNF4P78317 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
RNF4P78317 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
RNF4P78317 TPRG1LP1-201ENST00000598702 760 ntBASIC20.01■□□□□ 0.79
RNF4P78317 MIR5787-201ENST00000611784 55 ntBASIC20.01■□□□□ 0.79
RNF4P78317 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.01■□□□□ 0.79
RNF4P78317 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RNF4P78317 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20■□□□□ 0.79
RNF4P78317 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
RNF4P78317 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RNF4P78317 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20■□□□□ 0.79
RNF4P78317 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20■□□□□ 0.79
RNF4P78317 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC20■□□□□ 0.79
RNF4P78317 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RNF4P78317 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20■□□□□ 0.79
RNF4P78317 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
RNF4P78317 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
RNF4P78317 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RNF4P78317 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC20■□□□□ 0.79
RNF4P78317 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RNF4P78317 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RNF4P78317 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC19.99■□□□□ 0.79
RNF4P78317 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RNF4P78317 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RNF4P78317 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RNF4P78317 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RNF4P78317 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RNF4P78317 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RNF4P78317 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RNF4P78317 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
RNF4P78317 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RNF4P78317 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
RNF4P78317 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
RNF4P78317 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RNF4P78317 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
RNF4P78317 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
RNF4P78317 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
RNF4P78317 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC19.98■□□□□ 0.79
RNF4P78317 CCDC92B-201ENST00000575506 885 ntBASIC19.98■□□□□ 0.79
RNF4P78317 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC19.98■□□□□ 0.79
RNF4P78317 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC19.98■□□□□ 0.79
RNF4P78317 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
RNF4P78317 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
RNF4P78317 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
RNF4P78317 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
RNF4P78317 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
RNF4P78317 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
RNF4P78317 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
RNF4P78317 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
RNF4P78317 AP004607.7-201ENST00000527152 1677 ntBASIC19.97■□□□□ 0.79
RNF4P78317 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC19.97■□□□□ 0.79
RNF4P78317 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
RNF4P78317 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC19.97■□□□□ 0.79
RNF4P78317 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
RNF4P78317 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC19.97■□□□□ 0.79
RNF4P78317 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
RNF4P78317 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC19.97■□□□□ 0.79
RNF4P78317 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
RNF4P78317 AC034268.1-201ENST00000441047 882 ntBASIC19.97■□□□□ 0.79
RNF4P78317 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
RNF4P78317 TERF1P2-201ENST00000583350 1212 ntBASIC19.97■□□□□ 0.79
RNF4P78317 AC080038.3-201ENST00000623346 1952 ntBASIC19.97■□□□□ 0.79
RNF4P78317 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
RNF4P78317 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
RNF4P78317 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC19.96■□□□□ 0.79
RNF4P78317 LTK-203ENST00000453182 2412 ntTSL 2 BASIC19.96■□□□□ 0.79
RNF4P78317 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
RNF4P78317 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
RNF4P78317 AC009237.3-201ENST00000393279 1427 ntBASIC19.96■□□□□ 0.79
RNF4P78317 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
RNF4P78317 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
RNF4P78317 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
RNF4P78317 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
RNF4P78317 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
RNF4P78317 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
RNF4P78317 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
RNF4P78317 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
RNF4P78317 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC19.96■□□□□ 0.79
RNF4P78317 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC19.96■□□□□ 0.79
RNF4P78317 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
RNF4P78317 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC19.96■□□□□ 0.79
RNF4P78317 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
RNF4P78317 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC19.95■□□□□ 0.79
RNF4P78317 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC19.95■□□□□ 0.78
RNF4P78317 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
RNF4P78317 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
RNF4P78317 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
RNF4P78317 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
RNF4P78317 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
RNF4P78317 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
RNF4P78317 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC19.95■□□□□ 0.78
RNF4P78317 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
RNF4P78317 KRT18P14-201ENST00000534205 1250 ntBASIC19.95■□□□□ 0.78
RNF4P78317 DUX4L2-201ENST00000561772 1275 ntBASIC19.95■□□□□ 0.78
RNF4P78317 AL034346.1-201ENST00000568244 1277 ntBASIC19.95■□□□□ 0.78
RNF4P78317 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.95■□□□□ 0.78
RNF4P78317 ANKRD20A6P-201ENST00000618763 204 ntBASIC19.95■□□□□ 0.78
RNF4P78317 DUX4L6-201ENST00000626483 1275 ntBASIC19.95■□□□□ 0.78
RNF4P78317 DUX4L1-201ENST00000627662 1275 ntBASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms