Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC24.44■■□□□ 1.5
CIITAP33076 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CIITAP33076 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
CIITAP33076 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
CIITAP33076 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CIITAP33076 DUX4L2-201ENST00000561772 1275 ntBASIC24.44■■□□□ 1.5
CIITAP33076 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC24.44■■□□□ 1.5
CIITAP33076 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC24.44■■□□□ 1.5
CIITAP33076 MIR5787-201ENST00000611784 55 ntBASIC24.44■■□□□ 1.5
CIITAP33076 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC24.44■■□□□ 1.5
CIITAP33076 DUX4L6-201ENST00000626483 1275 ntBASIC24.44■■□□□ 1.5
CIITAP33076 DUX4L1-201ENST00000627662 1275 ntBASIC24.44■■□□□ 1.5
CIITAP33076 DUX4L8-201ENST00000629013 1275 ntBASIC24.44■■□□□ 1.5
CIITAP33076 DUX4L3-201ENST00000630187 1275 ntBASIC24.44■■□□□ 1.5
CIITAP33076 DUX4L7-201ENST00000630678 1275 ntBASIC24.44■■□□□ 1.5
CIITAP33076 DUX4L5-201ENST00000630834 1275 ntBASIC24.44■■□□□ 1.5
CIITAP33076 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
CIITAP33076 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC24.44■■□□□ 1.5
CIITAP33076 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC24.44■■□□□ 1.5
CIITAP33076 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
CIITAP33076 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC24.43■■□□□ 1.5
CIITAP33076 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CIITAP33076 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
CIITAP33076 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC24.43■■□□□ 1.5
CIITAP33076 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC24.43■■□□□ 1.5
CIITAP33076 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC24.43■■□□□ 1.5
CIITAP33076 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
CIITAP33076 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
CIITAP33076 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CIITAP33076 AP004607.7-201ENST00000527152 1677 ntBASIC24.43■■□□□ 1.5
CIITAP33076 AC005224.4-201ENST00000583262 1652 ntBASIC24.43■■□□□ 1.5
CIITAP33076 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC24.43■■□□□ 1.5
CIITAP33076 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
CIITAP33076 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
CIITAP33076 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC24.42■■□□□ 1.5
CIITAP33076 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
CIITAP33076 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CIITAP33076 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC24.42■■□□□ 1.5
CIITAP33076 HACD1-201ENST00000326961 773 ntTSL 2 BASIC24.42■■□□□ 1.5
CIITAP33076 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC24.42■■□□□ 1.5
CIITAP33076 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC24.42■■□□□ 1.5
CIITAP33076 AC034268.1-201ENST00000441047 882 ntBASIC24.42■■□□□ 1.5
CIITAP33076 AL034346.1-201ENST00000568244 1277 ntBASIC24.42■■□□□ 1.5
CIITAP33076 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC24.42■■□□□ 1.5
CIITAP33076 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC24.42■■□□□ 1.5
CIITAP33076 CPT2-209ENST00000636935 803 ntTSL 5 BASIC24.42■■□□□ 1.5
CIITAP33076 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC24.42■■□□□ 1.5
CIITAP33076 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC24.41■■□□□ 1.5
CIITAP33076 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CIITAP33076 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC24.41■■□□□ 1.5
CIITAP33076 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CIITAP33076 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CIITAP33076 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CIITAP33076 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC24.41■■□□□ 1.5
CIITAP33076 KRT18P14-201ENST00000534205 1250 ntBASIC24.41■■□□□ 1.5
CIITAP33076 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC24.41■■□□□ 1.5
CIITAP33076 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC24.41■■□□□ 1.5
CIITAP33076 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC24.41■■□□□ 1.5
CIITAP33076 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
CIITAP33076 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
CIITAP33076 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC24.41■■□□□ 1.5
CIITAP33076 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC24.4■■□□□ 1.5
CIITAP33076 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CIITAP33076 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
CIITAP33076 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC24.4■■□□□ 1.5
CIITAP33076 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CIITAP33076 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
CIITAP33076 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC24.4■■□□□ 1.5
CIITAP33076 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CIITAP33076 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC24.4■■□□□ 1.5
CIITAP33076 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC24.4■■□□□ 1.5
CIITAP33076 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CIITAP33076 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC24.39■■□□□ 1.5
CIITAP33076 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
CIITAP33076 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC24.39■■□□□ 1.5
CIITAP33076 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC24.39■■□□□ 1.49
CIITAP33076 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
CIITAP33076 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC24.39■■□□□ 1.49
CIITAP33076 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC24.39■■□□□ 1.49
CIITAP33076 AC055733.4-201ENST00000638462 1354 ntBASIC24.39■■□□□ 1.49
CIITAP33076 PXK-203ENST00000383715 1756 ntTSL 5 BASIC24.39■■□□□ 1.49
CIITAP33076 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
CIITAP33076 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
CIITAP33076 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.49
CIITAP33076 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CIITAP33076 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CIITAP33076 AC012676.1-201ENST00000574705 1949 ntBASIC24.38■■□□□ 1.49
CIITAP33076 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
CIITAP33076 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
CIITAP33076 ANKRD20A6P-201ENST00000618763 204 ntBASIC24.38■■□□□ 1.49
CIITAP33076 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
CIITAP33076 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
CIITAP33076 AC233723.2-201ENST00000623798 2106 ntBASIC24.38■■□□□ 1.49
CIITAP33076 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CIITAP33076 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC24.38■■□□□ 1.49
CIITAP33076 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC24.38■■□□□ 1.49
CIITAP33076 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
CIITAP33076 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
CIITAP33076 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
CIITAP33076 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC24.37■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms