Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC25.56■■□□□ 1.68
HMGB1P09429 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC25.56■■□□□ 1.68
HMGB1P09429 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC25.55■■□□□ 1.68
HMGB1P09429 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
HMGB1P09429 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
HMGB1P09429 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
HMGB1P09429 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC25.55■■□□□ 1.68
HMGB1P09429 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC25.55■■□□□ 1.68
HMGB1P09429 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
HMGB1P09429 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC25.55■■□□□ 1.68
HMGB1P09429 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC25.55■■□□□ 1.68
HMGB1P09429 MPST-208ENST00000628507 698 ntTSL 5 BASIC25.55■■□□□ 1.68
HMGB1P09429 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC25.55■■□□□ 1.68
HMGB1P09429 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
HMGB1P09429 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC25.55■■□□□ 1.68
HMGB1P09429 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC25.55■■□□□ 1.68
HMGB1P09429 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
HMGB1P09429 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC25.55■■□□□ 1.68
HMGB1P09429 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC25.54■■□□□ 1.68
HMGB1P09429 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
HMGB1P09429 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
HMGB1P09429 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
HMGB1P09429 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
HMGB1P09429 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC25.54■■□□□ 1.68
HMGB1P09429 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC25.54■■□□□ 1.68
HMGB1P09429 BID-212ENST00000614949 1988 ntTSL 5 BASIC25.54■■□□□ 1.68
HMGB1P09429 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC25.54■■□□□ 1.68
HMGB1P09429 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
HMGB1P09429 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC25.53■■□□□ 1.68
HMGB1P09429 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC25.53■■□□□ 1.68
HMGB1P09429 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC25.53■■□□□ 1.68
HMGB1P09429 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
HMGB1P09429 AC027682.1-201ENST00000562846 899 ntBASIC25.53■■□□□ 1.68
HMGB1P09429 AC126544.1-201ENST00000580842 1059 ntBASIC25.53■■□□□ 1.68
HMGB1P09429 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC25.53■■□□□ 1.68
HMGB1P09429 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
HMGB1P09429 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC25.53■■□□□ 1.68
HMGB1P09429 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
HMGB1P09429 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
HMGB1P09429 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC25.53■■□□□ 1.68
HMGB1P09429 FAM99A-202ENST00000538190 1989 ntBASIC25.53■■□□□ 1.68
HMGB1P09429 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
HMGB1P09429 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC25.52■■□□□ 1.68
HMGB1P09429 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
HMGB1P09429 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
HMGB1P09429 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC25.52■■□□□ 1.68
HMGB1P09429 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC25.52■■□□□ 1.68
HMGB1P09429 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC25.52■■□□□ 1.68
HMGB1P09429 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC25.52■■□□□ 1.68
HMGB1P09429 AICDA-202ENST00000537228 667 ntTSL 5 BASIC25.52■■□□□ 1.68
HMGB1P09429 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
HMGB1P09429 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC25.52■■□□□ 1.68
HMGB1P09429 GRAMD4P4-201ENST00000613563 1115 ntBASIC25.52■■□□□ 1.68
HMGB1P09429 AL355001.2-201ENST00000620617 1191 ntBASIC25.52■■□□□ 1.68
HMGB1P09429 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
HMGB1P09429 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC25.52■■□□□ 1.68
HMGB1P09429 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
HMGB1P09429 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
HMGB1P09429 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
HMGB1P09429 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
HMGB1P09429 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC25.51■■□□□ 1.67
HMGB1P09429 NALT1-201ENST00000429224 738 ntTSL 5 BASIC25.51■■□□□ 1.67
HMGB1P09429 AC008764.7-201ENST00000593779 1081 ntBASIC25.51■■□□□ 1.67
HMGB1P09429 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
HMGB1P09429 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
HMGB1P09429 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
HMGB1P09429 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC25.51■■□□□ 1.67
HMGB1P09429 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC25.51■■□□□ 1.67
HMGB1P09429 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC25.51■■□□□ 1.67
HMGB1P09429 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
HMGB1P09429 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
HMGB1P09429 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC25.5■■□□□ 1.67
HMGB1P09429 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
HMGB1P09429 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC25.5■■□□□ 1.67
HMGB1P09429 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
HMGB1P09429 IGHV3-19-201ENST00000521488 291 ntBASIC25.5■■□□□ 1.67
HMGB1P09429 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC25.5■■□□□ 1.67
HMGB1P09429 AL034346.1-201ENST00000568244 1277 ntBASIC25.5■■□□□ 1.67
HMGB1P09429 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC25.5■■□□□ 1.67
HMGB1P09429 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
HMGB1P09429 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC25.49■■□□□ 1.67
HMGB1P09429 AC099791.1-201ENST00000416440 715 ntBASIC25.49■■□□□ 1.67
HMGB1P09429 AP001330.3-201ENST00000520123 633 ntBASIC25.49■■□□□ 1.67
HMGB1P09429 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC25.49■■□□□ 1.67
HMGB1P09429 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC25.49■■□□□ 1.67
HMGB1P09429 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
HMGB1P09429 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
HMGB1P09429 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
HMGB1P09429 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC25.49■■□□□ 1.67
HMGB1P09429 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC25.48■■□□□ 1.67
HMGB1P09429 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC25.48■■□□□ 1.67
HMGB1P09429 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC25.48■■□□□ 1.67
HMGB1P09429 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
HMGB1P09429 GOLGA2P6-201ENST00000340929 2049 ntBASIC25.48■■□□□ 1.67
HMGB1P09429 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC25.48■■□□□ 1.67
HMGB1P09429 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
HMGB1P09429 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
HMGB1P09429 AL139246.5-201ENST00000606645 996 ntBASIC25.48■■□□□ 1.67
HMGB1P09429 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
HMGB1P09429 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms