Protein–RNA interactions for Protein: O88427

Cacna1h, Voltage-dependent T-type calcium channel subunit alpha-1H, mousemouse

Predictions only

Length 2,365 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cacna1hO88427 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC26.11■■□□□ 1.77
Cacna1hO88427 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
Cacna1hO88427 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC26.11■■□□□ 1.77
Cacna1hO88427 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC26.1■■□□□ 1.77
Cacna1hO88427 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
Cacna1hO88427 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC26.09■■□□□ 1.77
Cacna1hO88427 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Cacna1hO88427 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC26.06■■□□□ 1.76
Cacna1hO88427 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC26.06■■□□□ 1.76
Cacna1hO88427 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
Cacna1hO88427 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC26.05■■□□□ 1.76
Cacna1hO88427 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC26.04■■□□□ 1.76
Cacna1hO88427 Gm11175-201ENSMUST00000116172 543 ntBASIC26.04■■□□□ 1.76
Cacna1hO88427 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC26.04■■□□□ 1.76
Cacna1hO88427 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC26.03■■□□□ 1.76
Cacna1hO88427 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Cacna1hO88427 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC26■■□□□ 1.75
Cacna1hO88427 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC25.97■■□□□ 1.75
Cacna1hO88427 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
Cacna1hO88427 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC25.97■■□□□ 1.75
Cacna1hO88427 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
Cacna1hO88427 Cap2-205ENSMUST00000225824 1634 ntBASIC25.96■■□□□ 1.75
Cacna1hO88427 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC25.96■■□□□ 1.75
Cacna1hO88427 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC25.96■■□□□ 1.75
Cacna1hO88427 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC25.96■■□□□ 1.75
Cacna1hO88427 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
Cacna1hO88427 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC25.93■■□□□ 1.74
Cacna1hO88427 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Cacna1hO88427 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
Cacna1hO88427 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
Cacna1hO88427 Gm15039-201ENSMUST00000118914 875 ntBASIC25.91■■□□□ 1.74
Cacna1hO88427 Gm43863-201ENSMUST00000203822 1192 ntBASIC25.91■■□□□ 1.74
Cacna1hO88427 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Cacna1hO88427 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Cacna1hO88427 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
Cacna1hO88427 Gm11599-201ENSMUST00000118720 878 ntBASIC25.9■■□□□ 1.74
Cacna1hO88427 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Cacna1hO88427 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Cacna1hO88427 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
Cacna1hO88427 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Cacna1hO88427 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Cacna1hO88427 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC25.87■■□□□ 1.73
Cacna1hO88427 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
Cacna1hO88427 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Cacna1hO88427 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC25.84■■□□□ 1.73
Cacna1hO88427 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
Cacna1hO88427 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
Cacna1hO88427 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
Cacna1hO88427 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
Cacna1hO88427 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC25.81■■□□□ 1.72
Cacna1hO88427 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC25.81■■□□□ 1.72
Cacna1hO88427 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC25.81■■□□□ 1.72
Cacna1hO88427 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
Cacna1hO88427 AC157572.2-201ENSMUST00000226970 908 ntBASIC25.81■■□□□ 1.72
Cacna1hO88427 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
Cacna1hO88427 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC25.8■■□□□ 1.72
Cacna1hO88427 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
Cacna1hO88427 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
Cacna1hO88427 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
Cacna1hO88427 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC25.74■■□□□ 1.71
Cacna1hO88427 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC25.73■■□□□ 1.71
Cacna1hO88427 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC25.7■■□□□ 1.7
Cacna1hO88427 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC25.7■■□□□ 1.7
Cacna1hO88427 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Cacna1hO88427 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC25.69■■□□□ 1.7
Cacna1hO88427 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
Cacna1hO88427 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC25.68■■□□□ 1.7
Cacna1hO88427 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
Cacna1hO88427 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC25.67■■□□□ 1.7
Cacna1hO88427 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
Cacna1hO88427 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.7
Cacna1hO88427 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC25.64■■□□□ 1.7
Cacna1hO88427 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC25.64■■□□□ 1.7
Cacna1hO88427 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC25.64■■□□□ 1.7
Cacna1hO88427 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC25.63■■□□□ 1.69
Cacna1hO88427 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC25.63■■□□□ 1.69
Cacna1hO88427 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
Cacna1hO88427 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Cacna1hO88427 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC25.61■■□□□ 1.69
Cacna1hO88427 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC25.57■■□□□ 1.68
Cacna1hO88427 Nkain2-201ENSMUST00000092602 558 ntBASIC25.55■■□□□ 1.68
Cacna1hO88427 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC25.54■■□□□ 1.68
Cacna1hO88427 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
Cacna1hO88427 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC25.53■■□□□ 1.68
Cacna1hO88427 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
Cacna1hO88427 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Cacna1hO88427 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC25.5■■□□□ 1.67
Cacna1hO88427 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC25.49■■□□□ 1.67
Cacna1hO88427 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
Cacna1hO88427 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Cacna1hO88427 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC25.47■■□□□ 1.67
Cacna1hO88427 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
Cacna1hO88427 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC25.46■■□□□ 1.67
Cacna1hO88427 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC25.45■■□□□ 1.66
Cacna1hO88427 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC25.44■■□□□ 1.66
Cacna1hO88427 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Cacna1hO88427 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC25.41■■□□□ 1.66
Cacna1hO88427 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC25.41■■□□□ 1.66
Cacna1hO88427 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
Cacna1hO88427 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
Retrieved 100 of 76,532 protein–RNA pairs in 12.6 ms