Protein–RNA interactions for Protein: O35600

Abca4, Retinal-specific ATP-binding cassette transporter, mousemouse

Predictions only

Length 2,310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Abca4O35600 Gm15039-201ENSMUST00000118914 875 ntBASIC25.28■■□□□ 1.64
Abca4O35600 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Abca4O35600 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Abca4O35600 Gm11175-201ENSMUST00000116172 543 ntBASIC25.27■■□□□ 1.64
Abca4O35600 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC25.27■■□□□ 1.64
Abca4O35600 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
Abca4O35600 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC25.25■■□□□ 1.63
Abca4O35600 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC25.24■■□□□ 1.63
Abca4O35600 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Abca4O35600 Mipep-204ENSMUST00000225043 1548 ntBASIC25.24■■□□□ 1.63
Abca4O35600 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC25.23■■□□□ 1.63
Abca4O35600 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC25.23■■□□□ 1.63
Abca4O35600 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC25.22■■□□□ 1.63
Abca4O35600 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Abca4O35600 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC25.21■■□□□ 1.63
Abca4O35600 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
Abca4O35600 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
Abca4O35600 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC25.18■■□□□ 1.62
Abca4O35600 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
Abca4O35600 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
Abca4O35600 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC25.17■■□□□ 1.62
Abca4O35600 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC25.15■■□□□ 1.62
Abca4O35600 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC25.15■■□□□ 1.62
Abca4O35600 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
Abca4O35600 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC25.12■■□□□ 1.61
Abca4O35600 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Abca4O35600 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC25.12■■□□□ 1.61
Abca4O35600 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC25.12■■□□□ 1.61
Abca4O35600 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
Abca4O35600 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Abca4O35600 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Abca4O35600 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Abca4O35600 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Abca4O35600 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
Abca4O35600 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
Abca4O35600 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
Abca4O35600 Gm11599-201ENSMUST00000118720 878 ntBASIC25.08■■□□□ 1.61
Abca4O35600 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
Abca4O35600 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Abca4O35600 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Abca4O35600 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
Abca4O35600 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
Abca4O35600 Gm43863-201ENSMUST00000203822 1192 ntBASIC25.06■■□□□ 1.6
Abca4O35600 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Abca4O35600 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
Abca4O35600 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC25■■□□□ 1.59
Abca4O35600 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC25■■□□□ 1.59
Abca4O35600 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC25■■□□□ 1.59
Abca4O35600 AC157572.2-201ENSMUST00000226970 908 ntBASIC25■■□□□ 1.59
Abca4O35600 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Abca4O35600 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC24.97■■□□□ 1.59
Abca4O35600 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC24.96■■□□□ 1.59
Abca4O35600 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
Abca4O35600 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
Abca4O35600 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
Abca4O35600 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
Abca4O35600 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Abca4O35600 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC24.94■■□□□ 1.58
Abca4O35600 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC24.93■■□□□ 1.58
Abca4O35600 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC24.92■■□□□ 1.58
Abca4O35600 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
Abca4O35600 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
Abca4O35600 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
Abca4O35600 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC24.9■■□□□ 1.58
Abca4O35600 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
Abca4O35600 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC24.89■■□□□ 1.58
Abca4O35600 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC24.87■■□□□ 1.57
Abca4O35600 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC24.87■■□□□ 1.57
Abca4O35600 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
Abca4O35600 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC24.86■■□□□ 1.57
Abca4O35600 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC24.86■■□□□ 1.57
Abca4O35600 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC24.83■■□□□ 1.57
Abca4O35600 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC24.83■■□□□ 1.57
Abca4O35600 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC24.83■■□□□ 1.56
Abca4O35600 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC24.81■■□□□ 1.56
Abca4O35600 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC24.8■■□□□ 1.56
Abca4O35600 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC24.79■■□□□ 1.56
Abca4O35600 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC24.79■■□□□ 1.56
Abca4O35600 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC24.79■■□□□ 1.56
Abca4O35600 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
Abca4O35600 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC24.76■■□□□ 1.55
Abca4O35600 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC24.75■■□□□ 1.55
Abca4O35600 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
Abca4O35600 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
Abca4O35600 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC24.7■■□□□ 1.54
Abca4O35600 Nkain2-201ENSMUST00000092602 558 ntBASIC24.7■■□□□ 1.54
Abca4O35600 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
Abca4O35600 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC24.69■■□□□ 1.54
Abca4O35600 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Abca4O35600 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Abca4O35600 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
Abca4O35600 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC24.65■■□□□ 1.54
Abca4O35600 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
Abca4O35600 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC24.63■■□□□ 1.53
Abca4O35600 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
Abca4O35600 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC24.6■■□□□ 1.53
Abca4O35600 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Abca4O35600 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
Abca4O35600 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.53
Abca4O35600 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC24.58■■□□□ 1.53
Retrieved 100 of 76,532 protein–RNA pairs in 13.7 ms