Protein–RNA interactions for Protein: A6H584

Col6a5, Collagen alpha-5(VI) chain, mousemouse

Predictions only

Length 2,640 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a5A6H584 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC20.31■□□□□ 0.84
Col6a5A6H584 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Col6a5A6H584 Gm42809-201ENSMUST00000198429 1138 ntBASIC20.3■□□□□ 0.84
Col6a5A6H584 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC20.3■□□□□ 0.84
Col6a5A6H584 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Col6a5A6H584 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Col6a5A6H584 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC20.29■□□□□ 0.84
Col6a5A6H584 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col6a5A6H584 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col6a5A6H584 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Col6a5A6H584 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Col6a5A6H584 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Col6a5A6H584 Cap2-205ENSMUST00000225824 1634 ntBASIC20.25■□□□□ 0.83
Col6a5A6H584 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Col6a5A6H584 Mipep-204ENSMUST00000225043 1548 ntBASIC20.24■□□□□ 0.83
Col6a5A6H584 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col6a5A6H584 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col6a5A6H584 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Col6a5A6H584 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col6a5A6H584 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col6a5A6H584 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col6a5A6H584 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col6a5A6H584 Gm11599-201ENSMUST00000118720 878 ntBASIC20.2■□□□□ 0.82
Col6a5A6H584 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC20.19■□□□□ 0.82
Col6a5A6H584 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
Col6a5A6H584 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col6a5A6H584 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col6a5A6H584 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col6a5A6H584 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col6a5A6H584 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Col6a5A6H584 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col6a5A6H584 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
Col6a5A6H584 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Col6a5A6H584 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col6a5A6H584 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col6a5A6H584 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Col6a5A6H584 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col6a5A6H584 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col6a5A6H584 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Col6a5A6H584 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col6a5A6H584 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col6a5A6H584 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col6a5A6H584 Gm43863-201ENSMUST00000203822 1192 ntBASIC20.09■□□□□ 0.81
Col6a5A6H584 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Col6a5A6H584 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Col6a5A6H584 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC20.08■□□□□ 0.81
Col6a5A6H584 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC20.08■□□□□ 0.81
Col6a5A6H584 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Col6a5A6H584 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Col6a5A6H584 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Col6a5A6H584 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Col6a5A6H584 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col6a5A6H584 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col6a5A6H584 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Col6a5A6H584 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Col6a5A6H584 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Col6a5A6H584 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col6a5A6H584 AC157572.2-201ENSMUST00000226970 908 ntBASIC20.03■□□□□ 0.8
Col6a5A6H584 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
Col6a5A6H584 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col6a5A6H584 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC20■□□□□ 0.79
Col6a5A6H584 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Col6a5A6H584 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Col6a5A6H584 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col6a5A6H584 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC19.97■□□□□ 0.79
Col6a5A6H584 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC19.96■□□□□ 0.79
Col6a5A6H584 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col6a5A6H584 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Col6a5A6H584 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Col6a5A6H584 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
Col6a5A6H584 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col6a5A6H584 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Col6a5A6H584 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
Col6a5A6H584 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col6a5A6H584 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
Col6a5A6H584 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col6a5A6H584 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Col6a5A6H584 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC19.86■□□□□ 0.77
Col6a5A6H584 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Col6a5A6H584 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC19.86■□□□□ 0.77
Col6a5A6H584 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Col6a5A6H584 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col6a5A6H584 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
Col6a5A6H584 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col6a5A6H584 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col6a5A6H584 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Col6a5A6H584 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Col6a5A6H584 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col6a5A6H584 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Col6a5A6H584 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col6a5A6H584 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC19.79■□□□□ 0.76
Col6a5A6H584 Nkain2-201ENSMUST00000092602 558 ntBASIC19.79■□□□□ 0.76
Col6a5A6H584 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col6a5A6H584 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC19.75■□□□□ 0.75
Col6a5A6H584 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC19.74■□□□□ 0.75
Col6a5A6H584 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Col6a5A6H584 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC19.73■□□□□ 0.75
Col6a5A6H584 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Col6a5A6H584 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col6a5A6H584 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 93.4 ms