Protein–RNA interactions for Protein: A0A0G2JEM0

Trav3n-3, T cell receptor alpha variable 3D-3 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3n-3A0A0G2JEM0 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trav3n-3A0A0G2JEM0 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trav3n-3A0A0G2JEM0 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trav3n-3A0A0G2JEM0 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC18.82■□□□□ 0.6
Trav3n-3A0A0G2JEM0 AC153890.1-201ENSMUST00000220021 2469 ntBASIC18.82■□□□□ 0.6
Trav3n-3A0A0G2JEM0 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trav3n-3A0A0G2JEM0 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trav3n-3A0A0G2JEM0 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trav3n-3A0A0G2JEM0 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trav3n-3A0A0G2JEM0 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trav3n-3A0A0G2JEM0 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Trav3n-3A0A0G2JEM0 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trav3n-3A0A0G2JEM0 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trav3n-3A0A0G2JEM0 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trav3n-3A0A0G2JEM0 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC18.79■□□□□ 0.6
Trav3n-3A0A0G2JEM0 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav3n-3A0A0G2JEM0 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav3n-3A0A0G2JEM0 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav3n-3A0A0G2JEM0 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trav3n-3A0A0G2JEM0 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trav3n-3A0A0G2JEM0 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Trav3n-3A0A0G2JEM0 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Trav3n-3A0A0G2JEM0 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trav3n-3A0A0G2JEM0 Amer2-203ENSMUST00000225247 2662 ntBASIC18.77■□□□□ 0.6
Trav3n-3A0A0G2JEM0 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC18.77■□□□□ 0.59
Trav3n-3A0A0G2JEM0 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Trav3n-3A0A0G2JEM0 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Trav3n-3A0A0G2JEM0 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trav3n-3A0A0G2JEM0 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Trav3n-3A0A0G2JEM0 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav3n-3A0A0G2JEM0 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Trav3n-3A0A0G2JEM0 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trav3n-3A0A0G2JEM0 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trav3n-3A0A0G2JEM0 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Trav3n-3A0A0G2JEM0 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trav3n-3A0A0G2JEM0 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trav3n-3A0A0G2JEM0 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav3n-3A0A0G2JEM0 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trav3n-3A0A0G2JEM0 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Trav3n-3A0A0G2JEM0 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC18.67■□□□□ 0.58
Trav3n-3A0A0G2JEM0 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav3n-3A0A0G2JEM0 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav3n-3A0A0G2JEM0 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trav3n-3A0A0G2JEM0 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trav3n-3A0A0G2JEM0 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trav3n-3A0A0G2JEM0 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav3n-3A0A0G2JEM0 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav3n-3A0A0G2JEM0 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trav3n-3A0A0G2JEM0 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav3n-3A0A0G2JEM0 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Trav3n-3A0A0G2JEM0 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav3n-3A0A0G2JEM0 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav3n-3A0A0G2JEM0 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav3n-3A0A0G2JEM0 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav3n-3A0A0G2JEM0 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Trav3n-3A0A0G2JEM0 AL845457.1-201ENSMUST00000197244 68 ntBASIC18.62■□□□□ 0.57
Trav3n-3A0A0G2JEM0 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav3n-3A0A0G2JEM0 Mipep-204ENSMUST00000225043 1548 ntBASIC18.6■□□□□ 0.57
Trav3n-3A0A0G2JEM0 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Trav3n-3A0A0G2JEM0 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trav3n-3A0A0G2JEM0 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Trav3n-3A0A0G2JEM0 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trav3n-3A0A0G2JEM0 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trav3n-3A0A0G2JEM0 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trav3n-3A0A0G2JEM0 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trav3n-3A0A0G2JEM0 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
Trav3n-3A0A0G2JEM0 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Trav3n-3A0A0G2JEM0 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trav3n-3A0A0G2JEM0 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
Trav3n-3A0A0G2JEM0 Gm20634-201ENSMUST00000090779 2956 ntBASIC18.54■□□□□ 0.56
Trav3n-3A0A0G2JEM0 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC18.54■□□□□ 0.56
Trav3n-3A0A0G2JEM0 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Trav3n-3A0A0G2JEM0 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav3n-3A0A0G2JEM0 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav3n-3A0A0G2JEM0 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav3n-3A0A0G2JEM0 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav3n-3A0A0G2JEM0 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
Trav3n-3A0A0G2JEM0 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav3n-3A0A0G2JEM0 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trav3n-3A0A0G2JEM0 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trav3n-3A0A0G2JEM0 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Trav3n-3A0A0G2JEM0 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Trav3n-3A0A0G2JEM0 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Trav3n-3A0A0G2JEM0 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Trav3n-3A0A0G2JEM0 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav3n-3A0A0G2JEM0 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Trav3n-3A0A0G2JEM0 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav3n-3A0A0G2JEM0 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav3n-3A0A0G2JEM0 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav3n-3A0A0G2JEM0 Gm25262-201ENSMUST00000174934 133 ntBASIC18.48■□□□□ 0.55
Trav3n-3A0A0G2JEM0 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC18.47■□□□□ 0.55
Trav3n-3A0A0G2JEM0 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC18.47■□□□□ 0.55
Trav3n-3A0A0G2JEM0 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
Trav3n-3A0A0G2JEM0 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
Trav3n-3A0A0G2JEM0 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav3n-3A0A0G2JEM0 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trav3n-3A0A0G2JEM0 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
Trav3n-3A0A0G2JEM0 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trav3n-3A0A0G2JEM0 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trav3n-3A0A0G2JEM0 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 20.7 ms