Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 CA15P2-201ENST00000611168 834 ntBASIC20.11■□□□□ 0.81
USE1Q9NZ43 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
USE1Q9NZ43 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.11■□□□□ 0.81
USE1Q9NZ43 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
USE1Q9NZ43 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
USE1Q9NZ43 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
USE1Q9NZ43 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
USE1Q9NZ43 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.1■□□□□ 0.81
USE1Q9NZ43 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.1■□□□□ 0.81
USE1Q9NZ43 FEM1AP4-201ENST00000443167 1987 ntBASIC20.1■□□□□ 0.81
USE1Q9NZ43 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
USE1Q9NZ43 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.1■□□□□ 0.81
USE1Q9NZ43 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.1■□□□□ 0.81
USE1Q9NZ43 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
USE1Q9NZ43 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
USE1Q9NZ43 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.1■□□□□ 0.81
USE1Q9NZ43 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.1■□□□□ 0.81
USE1Q9NZ43 AC120024.1-201ENST00000562672 995 ntBASIC20.1■□□□□ 0.81
USE1Q9NZ43 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
USE1Q9NZ43 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
USE1Q9NZ43 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
USE1Q9NZ43 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
USE1Q9NZ43 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
USE1Q9NZ43 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
USE1Q9NZ43 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
USE1Q9NZ43 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.09■□□□□ 0.81
USE1Q9NZ43 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
USE1Q9NZ43 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
USE1Q9NZ43 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
USE1Q9NZ43 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
USE1Q9NZ43 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
USE1Q9NZ43 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.09■□□□□ 0.81
USE1Q9NZ43 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.09■□□□□ 0.81
USE1Q9NZ43 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC20.08■□□□□ 0.81
USE1Q9NZ43 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.08■□□□□ 0.81
USE1Q9NZ43 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
USE1Q9NZ43 FP325331.1-202ENST00000623531 1380 ntBASIC20.08■□□□□ 0.81
USE1Q9NZ43 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
USE1Q9NZ43 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
USE1Q9NZ43 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
USE1Q9NZ43 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
USE1Q9NZ43 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.08■□□□□ 0.81
USE1Q9NZ43 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
USE1Q9NZ43 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.08■□□□□ 0.8
USE1Q9NZ43 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
USE1Q9NZ43 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
USE1Q9NZ43 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
USE1Q9NZ43 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC20.07■□□□□ 0.8
USE1Q9NZ43 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
USE1Q9NZ43 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
USE1Q9NZ43 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC20.07■□□□□ 0.8
USE1Q9NZ43 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
USE1Q9NZ43 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
USE1Q9NZ43 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.07■□□□□ 0.8
USE1Q9NZ43 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USE1Q9NZ43 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
USE1Q9NZ43 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USE1Q9NZ43 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
USE1Q9NZ43 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
USE1Q9NZ43 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC20.06■□□□□ 0.8
USE1Q9NZ43 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
USE1Q9NZ43 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USE1Q9NZ43 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
USE1Q9NZ43 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
USE1Q9NZ43 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.06■□□□□ 0.8
USE1Q9NZ43 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC20.06■□□□□ 0.8
USE1Q9NZ43 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USE1Q9NZ43 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.06■□□□□ 0.8
USE1Q9NZ43 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
USE1Q9NZ43 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC20.06■□□□□ 0.8
USE1Q9NZ43 MIR4281-201ENST00000580852 62 ntBASIC20.06■□□□□ 0.8
USE1Q9NZ43 LSM7-203ENST00000585409 512 ntTSL 2 BASIC20.06■□□□□ 0.8
USE1Q9NZ43 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
USE1Q9NZ43 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.06■□□□□ 0.8
USE1Q9NZ43 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.06■□□□□ 0.8
USE1Q9NZ43 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USE1Q9NZ43 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USE1Q9NZ43 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC20.06■□□□□ 0.8
USE1Q9NZ43 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USE1Q9NZ43 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
USE1Q9NZ43 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USE1Q9NZ43 AC092667.1-201ENST00000434301 2586 ntBASIC20.05■□□□□ 0.8
USE1Q9NZ43 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.05■□□□□ 0.8
USE1Q9NZ43 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
USE1Q9NZ43 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.05■□□□□ 0.8
USE1Q9NZ43 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC20.05■□□□□ 0.8
USE1Q9NZ43 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC20.05■□□□□ 0.8
USE1Q9NZ43 AC009086.3-201ENST00000623486 1008 ntBASIC20.05■□□□□ 0.8
USE1Q9NZ43 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC20.05■□□□□ 0.8
USE1Q9NZ43 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
USE1Q9NZ43 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
USE1Q9NZ43 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USE1Q9NZ43 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.05■□□□□ 0.8
USE1Q9NZ43 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.05■□□□□ 0.8
USE1Q9NZ43 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.05■□□□□ 0.8
USE1Q9NZ43 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
USE1Q9NZ43 HYI-213ENST00000583037 1322 ntTSL 5 BASIC20.04■□□□□ 0.8
USE1Q9NZ43 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
USE1Q9NZ43 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USE1Q9NZ43 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 172.6 ms