Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ESRRAP2-201ENST00000418437 1549 ntBASIC21.46■■□□□ 1.03
TRIM39Q9HCM9 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
TRIM39Q9HCM9 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC21.46■■□□□ 1.03
TRIM39Q9HCM9 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TRIM39Q9HCM9 MFF-208ENST00000409616 1247 ntTSL 5 BASIC21.46■■□□□ 1.03
TRIM39Q9HCM9 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC21.46■■□□□ 1.03
TRIM39Q9HCM9 SMUG1P1-201ENST00000590640 811 ntBASIC21.46■■□□□ 1.03
TRIM39Q9HCM9 C1orf229-201ENST00000623686 2258 ntBASIC21.46■■□□□ 1.03
TRIM39Q9HCM9 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TRIM39Q9HCM9 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
TRIM39Q9HCM9 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TRIM39Q9HCM9 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TRIM39Q9HCM9 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TRIM39Q9HCM9 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
TRIM39Q9HCM9 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
TRIM39Q9HCM9 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
TRIM39Q9HCM9 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TRIM39Q9HCM9 AC027612.3-201ENST00000413684 1047 ntBASIC21.45■■□□□ 1.02
TRIM39Q9HCM9 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC21.45■■□□□ 1.02
TRIM39Q9HCM9 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC21.45■■□□□ 1.02
TRIM39Q9HCM9 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC21.45■■□□□ 1.02
TRIM39Q9HCM9 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TRIM39Q9HCM9 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC21.45■■□□□ 1.02
TRIM39Q9HCM9 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TRIM39Q9HCM9 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
TRIM39Q9HCM9 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC21.45■■□□□ 1.02
TRIM39Q9HCM9 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TRIM39Q9HCM9 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC21.44■■□□□ 1.02
TRIM39Q9HCM9 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
TRIM39Q9HCM9 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
TRIM39Q9HCM9 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
TRIM39Q9HCM9 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC21.44■■□□□ 1.02
TRIM39Q9HCM9 RARRES2P6-201ENST00000567333 442 ntBASIC21.44■■□□□ 1.02
TRIM39Q9HCM9 SP2-202ENST00000613139 908 ntTSL 5 BASIC21.44■■□□□ 1.02
TRIM39Q9HCM9 MIR6084-201ENST00000622012 110 ntBASIC21.44■■□□□ 1.02
TRIM39Q9HCM9 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TRIM39Q9HCM9 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
TRIM39Q9HCM9 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
TRIM39Q9HCM9 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TRIM39Q9HCM9 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
TRIM39Q9HCM9 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.43■■□□□ 1.02
TRIM39Q9HCM9 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
TRIM39Q9HCM9 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC21.43■■□□□ 1.02
TRIM39Q9HCM9 AC026271.2-201ENST00000428091 497 ntBASIC21.43■■□□□ 1.02
TRIM39Q9HCM9 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC21.43■■□□□ 1.02
TRIM39Q9HCM9 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC21.43■■□□□ 1.02
TRIM39Q9HCM9 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
TRIM39Q9HCM9 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
TRIM39Q9HCM9 MIR6821-201ENST00000617625 74 ntBASIC21.43■■□□□ 1.02
TRIM39Q9HCM9 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC21.43■■□□□ 1.02
TRIM39Q9HCM9 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TRIM39Q9HCM9 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TRIM39Q9HCM9 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
TRIM39Q9HCM9 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TRIM39Q9HCM9 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TRIM39Q9HCM9 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TRIM39Q9HCM9 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
TRIM39Q9HCM9 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TRIM39Q9HCM9 AC097381.1-201ENST00000429019 1296 ntBASIC21.42■■□□□ 1.02
TRIM39Q9HCM9 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC21.42■■□□□ 1.02
TRIM39Q9HCM9 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TRIM39Q9HCM9 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
TRIM39Q9HCM9 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TRIM39Q9HCM9 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC21.42■■□□□ 1.02
TRIM39Q9HCM9 AC137767.1-201ENST00000602918 1920 ntBASIC21.42■■□□□ 1.02
TRIM39Q9HCM9 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.42■■□□□ 1.02
TRIM39Q9HCM9 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
TRIM39Q9HCM9 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM39Q9HCM9 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM39Q9HCM9 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
TRIM39Q9HCM9 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM39Q9HCM9 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM39Q9HCM9 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM39Q9HCM9 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM39Q9HCM9 YBX1P1-201ENST00000445822 960 ntBASIC21.41■■□□□ 1.02
TRIM39Q9HCM9 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC21.41■■□□□ 1.02
TRIM39Q9HCM9 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM39Q9HCM9 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM39Q9HCM9 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM39Q9HCM9 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
TRIM39Q9HCM9 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
TRIM39Q9HCM9 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM39Q9HCM9 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM39Q9HCM9 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRIM39Q9HCM9 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRIM39Q9HCM9 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRIM39Q9HCM9 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC21.4■■□□□ 1.02
TRIM39Q9HCM9 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRIM39Q9HCM9 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
TRIM39Q9HCM9 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.4■■□□□ 1.02
TRIM39Q9HCM9 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.4■■□□□ 1.02
TRIM39Q9HCM9 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRIM39Q9HCM9 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
TRIM39Q9HCM9 NT5C3AP1-201ENST00000394500 1012 ntBASIC21.4■■□□□ 1.02
TRIM39Q9HCM9 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
TRIM39Q9HCM9 AC123595.1-201ENST00000440769 1046 ntBASIC21.4■■□□□ 1.02
TRIM39Q9HCM9 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRIM39Q9HCM9 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
TRIM39Q9HCM9 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
TRIM39Q9HCM9 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms