Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM40Q6P9F5 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM40Q6P9F5 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.78■□□□□ 0.92
TRIM40Q6P9F5 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM40Q6P9F5 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.78■□□□□ 0.92
TRIM40Q6P9F5 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM40Q6P9F5 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
TRIM40Q6P9F5 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.78■□□□□ 0.92
TRIM40Q6P9F5 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.78■□□□□ 0.92
TRIM40Q6P9F5 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.78■□□□□ 0.92
TRIM40Q6P9F5 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.78■□□□□ 0.92
TRIM40Q6P9F5 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.78■□□□□ 0.92
TRIM40Q6P9F5 CA15P2-201ENST00000611168 834 ntBASIC20.78■□□□□ 0.92
TRIM40Q6P9F5 AL355001.2-201ENST00000620617 1191 ntBASIC20.78■□□□□ 0.92
TRIM40Q6P9F5 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM40Q6P9F5 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.78■□□□□ 0.92
TRIM40Q6P9F5 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM40Q6P9F5 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM40Q6P9F5 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM40Q6P9F5 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM40Q6P9F5 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM40Q6P9F5 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.77■□□□□ 0.92
TRIM40Q6P9F5 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
TRIM40Q6P9F5 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.77■□□□□ 0.92
TRIM40Q6P9F5 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM40Q6P9F5 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM40Q6P9F5 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM40Q6P9F5 AP005435.1-201ENST00000529293 1178 ntBASIC20.77■□□□□ 0.92
TRIM40Q6P9F5 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM40Q6P9F5 AC133561.4-201ENST00000566112 224 ntBASIC20.77■□□□□ 0.92
TRIM40Q6P9F5 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM40Q6P9F5 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
TRIM40Q6P9F5 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.91
TRIM40Q6P9F5 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
TRIM40Q6P9F5 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
TRIM40Q6P9F5 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM40Q6P9F5 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
TRIM40Q6P9F5 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM40Q6P9F5 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.76■□□□□ 0.91
TRIM40Q6P9F5 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
TRIM40Q6P9F5 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.76■□□□□ 0.91
TRIM40Q6P9F5 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
TRIM40Q6P9F5 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.76■□□□□ 0.91
TRIM40Q6P9F5 AC027682.1-201ENST00000562846 899 ntBASIC20.76■□□□□ 0.91
TRIM40Q6P9F5 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
TRIM40Q6P9F5 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
TRIM40Q6P9F5 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM40Q6P9F5 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM40Q6P9F5 CLDN5-201ENST00000403084 2357 ntBASIC20.75■□□□□ 0.91
TRIM40Q6P9F5 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.75■□□□□ 0.91
TRIM40Q6P9F5 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM40Q6P9F5 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
TRIM40Q6P9F5 AC010141.3-201ENST00000456659 717 ntBASIC20.75■□□□□ 0.91
TRIM40Q6P9F5 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.75■□□□□ 0.91
TRIM40Q6P9F5 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.75■□□□□ 0.91
TRIM40Q6P9F5 AC126544.1-201ENST00000580842 1059 ntBASIC20.75■□□□□ 0.91
TRIM40Q6P9F5 AC008764.7-201ENST00000593779 1081 ntBASIC20.75■□□□□ 0.91
TRIM40Q6P9F5 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM40Q6P9F5 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM40Q6P9F5 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
TRIM40Q6P9F5 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM40Q6P9F5 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM40Q6P9F5 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.74■□□□□ 0.91
TRIM40Q6P9F5 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM40Q6P9F5 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM40Q6P9F5 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM40Q6P9F5 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM40Q6P9F5 AP001330.3-201ENST00000520123 633 ntBASIC20.74■□□□□ 0.91
TRIM40Q6P9F5 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.74■□□□□ 0.91
TRIM40Q6P9F5 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.74■□□□□ 0.91
TRIM40Q6P9F5 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.74■□□□□ 0.91
TRIM40Q6P9F5 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM40Q6P9F5 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM40Q6P9F5 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
TRIM40Q6P9F5 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.74■□□□□ 0.91
TRIM40Q6P9F5 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM40Q6P9F5 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM40Q6P9F5 AC092053.2-201ENST00000640557 1818 ntBASIC20.74■□□□□ 0.91
TRIM40Q6P9F5 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM40Q6P9F5 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM40Q6P9F5 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM40Q6P9F5 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM40Q6P9F5 AC137767.1-201ENST00000602918 1920 ntBASIC20.73■□□□□ 0.91
TRIM40Q6P9F5 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
TRIM40Q6P9F5 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.73■□□□□ 0.91
TRIM40Q6P9F5 AC099791.1-201ENST00000416440 715 ntBASIC20.73■□□□□ 0.91
TRIM40Q6P9F5 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM40Q6P9F5 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.73■□□□□ 0.91
TRIM40Q6P9F5 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM40Q6P9F5 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.73■□□□□ 0.91
TRIM40Q6P9F5 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM40Q6P9F5 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM40Q6P9F5 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM40Q6P9F5 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM40Q6P9F5 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
TRIM40Q6P9F5 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM40Q6P9F5 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
TRIM40Q6P9F5 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM40Q6P9F5 AF213884.3-201ENST00000563833 479 ntBASIC20.72■□□□□ 0.91
TRIM40Q6P9F5 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms