Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 AC136469.2-201ENST00000623944 1028 ntBASIC20.66■□□□□ 0.9
RAE1P78406 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RAE1P78406 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
RAE1P78406 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
RAE1P78406 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
RAE1P78406 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RAE1P78406 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RAE1P78406 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.65■□□□□ 0.9
RAE1P78406 FAM99A-202ENST00000538190 1989 ntBASIC20.65■□□□□ 0.9
RAE1P78406 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RAE1P78406 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RAE1P78406 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
RAE1P78406 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RAE1P78406 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
RAE1P78406 AL136116.3-201ENST00000402907 1138 ntBASIC20.65■□□□□ 0.9
RAE1P78406 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RAE1P78406 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.65■□□□□ 0.9
RAE1P78406 AC011298.3-201ENST00000615796 283 ntBASIC20.65■□□□□ 0.9
RAE1P78406 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.65■□□□□ 0.9
RAE1P78406 AC068587.7-201ENST00000641602 218 ntBASIC20.65■□□□□ 0.9
RAE1P78406 AC007375.3-201ENST00000600936 2314 ntBASIC20.65■□□□□ 0.9
RAE1P78406 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
RAE1P78406 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
RAE1P78406 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.64■□□□□ 0.9
RAE1P78406 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
RAE1P78406 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
RAE1P78406 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.64■□□□□ 0.89
RAE1P78406 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RAE1P78406 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.64■□□□□ 0.89
RAE1P78406 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RAE1P78406 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RAE1P78406 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RAE1P78406 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
RAE1P78406 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RAE1P78406 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RAE1P78406 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RAE1P78406 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RAE1P78406 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RAE1P78406 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RAE1P78406 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RAE1P78406 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.63■□□□□ 0.89
RAE1P78406 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.63■□□□□ 0.89
RAE1P78406 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
RAE1P78406 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RAE1P78406 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RAE1P78406 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.63■□□□□ 0.89
RAE1P78406 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.62■□□□□ 0.89
RAE1P78406 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
RAE1P78406 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RAE1P78406 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
RAE1P78406 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RAE1P78406 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RAE1P78406 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.62■□□□□ 0.89
RAE1P78406 SLC47A1P1-202ENST00000449666 945 ntBASIC20.62■□□□□ 0.89
RAE1P78406 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.62■□□□□ 0.89
RAE1P78406 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
RAE1P78406 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.62■□□□□ 0.89
RAE1P78406 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RAE1P78406 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
RAE1P78406 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
RAE1P78406 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.61■□□□□ 0.89
RAE1P78406 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.61■□□□□ 0.89
RAE1P78406 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.61■□□□□ 0.89
RAE1P78406 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RAE1P78406 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.61■□□□□ 0.89
RAE1P78406 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
RAE1P78406 AC131212.1-201ENST00000613771 668 ntBASIC20.61■□□□□ 0.89
RAE1P78406 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RAE1P78406 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RAE1P78406 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.6■□□□□ 0.89
RAE1P78406 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RAE1P78406 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RAE1P78406 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
RAE1P78406 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.6■□□□□ 0.89
RAE1P78406 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RAE1P78406 AC010141.3-201ENST00000456659 717 ntBASIC20.6■□□□□ 0.89
RAE1P78406 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.6■□□□□ 0.89
RAE1P78406 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC20.6■□□□□ 0.89
RAE1P78406 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RAE1P78406 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RAE1P78406 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
RAE1P78406 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.59■□□□□ 0.89
RAE1P78406 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RAE1P78406 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RAE1P78406 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RAE1P78406 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
RAE1P78406 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.59■□□□□ 0.89
RAE1P78406 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
RAE1P78406 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.59■□□□□ 0.89
RAE1P78406 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RAE1P78406 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.59■□□□□ 0.89
RAE1P78406 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RAE1P78406 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RAE1P78406 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RAE1P78406 OR7E47P-201ENST00000546390 1422 ntBASIC20.59■□□□□ 0.89
RAE1P78406 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.59■□□□□ 0.89
RAE1P78406 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.59■□□□□ 0.89
RAE1P78406 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.58■□□□□ 0.89
RAE1P78406 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
RAE1P78406 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms