Protein–RNA interactions for Protein: P48412

UPF3, Nonsense-mediated mRNA decay protein 3, yeastyeast

Known RBP Predictions only

Length 387 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UPF3P48412 RIA1YNL163C 3333 nt4.13□□□□□ -1.75
UPF3P48412 CIT1YNR001C 1440 nt4.13□□□□□ -1.75
UPF3P48412 ISM1YPL040C 3009 nt4.13□□□□□ -1.75
UPF3P48412 YCR016WYCR016W 873 nt4.13□□□□□ -1.75
UPF3P48412 THI13YDL244W 1023 nt4.13□□□□□ -1.75
UPF3P48412 THI11YJR156C 1023 nt4.13□□□□□ -1.75
UPF3P48412 MAP1YLR244C 1164 nt4.13□□□□□ -1.75
UPF3P48412 MVD1YNR043W 1191 nt4.13□□□□□ -1.75
UPF3P48412 YBR089WYBR089W 600 nt4.13□□□□□ -1.75
UPF3P48412 SEC6YIL068C 2418 nt4.13□□□□□ -1.75
UPF3P48412 ECM18YDR125C 1362 nt4.13□□□□□ -1.75
UPF3P48412 YGR117CYGR117C 1431 nt4.12□□□□□ -1.75
UPF3P48412 LAS1YKR063C 1509 nt4.12□□□□□ -1.75
UPF3P48412 NRP1YDL167C 2160 nt4.12□□□□□ -1.75
UPF3P48412 PRM15YMR278W 1869 nt4.12□□□□□ -1.75
UPF3P48412 RPL24AYGL031C 468 nt4.12□□□□□ -1.75
UPF3P48412 YGL138CYGL138C 1038 nt4.12□□□□□ -1.75
UPF3P48412 RPL8AYHL033C 771 nt4.12□□□□□ -1.75
UPF3P48412 YIL014C-AYIL014C-A 315 nt4.12□□□□□ -1.75
UPF3P48412 RPL18BYNL301C 561 nt4.12□□□□□ -1.75
UPF3P48412 RPL18AYOL120C 561 nt4.12□□□□□ -1.75
UPF3P48412 RGS2YOR107W 930 nt4.12□□□□□ -1.75
UPF3P48412 YPR071WYPR071W 636 nt4.12□□□□□ -1.75
UPF3P48412 EMP47YFL048C 1338 nt4.12□□□□□ -1.75
UPF3P48412 TSR1YDL060W 2367 nt4.11□□□□□ -1.75
UPF3P48412 CET1YPL228W 1650 nt4.11□□□□□ -1.75
UPF3P48412 FCF1YDR339C 570 nt4.11□□□□□ -1.75
UPF3P48412 tQ(UUG)CtQ(UUG)C 72 nt4.11□□□□□ -1.75
UPF3P48412 tQ(UUG)D1tQ(UUG)D1 72 nt4.11□□□□□ -1.75
UPF3P48412 tQ(UUG)D2tQ(UUG)D2 72 nt4.11□□□□□ -1.75
UPF3P48412 tQ(UUG)D3tQ(UUG)D3 72 nt4.11□□□□□ -1.75
UPF3P48412 tQ(UUG)E1tQ(UUG)E1 72 nt4.11□□□□□ -1.75
UPF3P48412 tQ(UUG)HtQ(UUG)H 72 nt4.11□□□□□ -1.75
UPF3P48412 tQ(UUG)LtQ(UUG)L 72 nt4.11□□□□□ -1.75
UPF3P48412 AHP1YLR109W 531 nt4.11□□□□□ -1.75
UPF3P48412 YLR364C-AYLR364C-A 123 nt4.11□□□□□ -1.75
UPF3P48412 YOL038C-AYOL038C-A 96 nt4.11□□□□□ -1.75
UPF3P48412 SUR1YPL057C 1149 nt4.11□□□□□ -1.75
UPF3P48412 YPL278CYPL278C 303 nt4.11□□□□□ -1.75
UPF3P48412 RER1YCL001W 567 nt4.11□□□□□ -1.75
UPF3P48412 TCO89YPL180W 2400 nt4.11□□□□□ -1.75
UPF3P48412 ULS1YOR191W 4860 nt4.11□□□□□ -1.75
UPF3P48412 VPS73YGL104C 1461 nt4.11□□□□□ -1.75
UPF3P48412 SHR3YDL212W 633 nt4.1□□□□□ -1.75
UPF3P48412 SOL4YGR248W 768 nt4.1□□□□□ -1.75
UPF3P48412 RIF2YLR453C 1188 nt4.1□□□□□ -1.75
UPF3P48412 ARG80YMR042W 534 nt4.1□□□□□ -1.75
UPF3P48412 ATG34YOL083W 1239 nt4.1□□□□□ -1.75
UPF3P48412 IDH2YOR136W 1110 nt4.1□□□□□ -1.75
UPF3P48412 YPL077CYPL077C 723 nt4.1□□□□□ -1.75
UPF3P48412 YPR148CYPR148C 1308 nt4.1□□□□□ -1.75
UPF3P48412 YRM1YOR172W 2361 nt4.1□□□□□ -1.75
UPF3P48412 EMC1YCL045C 2283 nt4.09□□□□□ -1.75
UPF3P48412 VID27YNL212W 2349 nt4.09□□□□□ -1.75
UPF3P48412 PLP1YDR183W 693 nt4.09□□□□□ -1.75
UPF3P48412 WBP1YEL002C 1293 nt4.09□□□□□ -1.75
UPF3P48412 YFR032C-BYFR032C-B 264 nt4.09□□□□□ -1.75
UPF3P48412 YKL162CYKL162C 1209 nt4.09□□□□□ -1.75
UPF3P48412 PFK27YOL136C 1194 nt4.09□□□□□ -1.75
UPF3P48412 MTR10YOR160W 2919 nt4.09□□□□□ -1.75
UPF3P48412 SMI1YGR229C 1518 nt4.09□□□□□ -1.75
UPF3P48412 RRN7YJL025W 1545 nt4.09□□□□□ -1.75
UPF3P48412 YOL019WYOL019W 1656 nt4.09□□□□□ -1.76
UPF3P48412 DPH6YLR143W 2058 nt4.09□□□□□ -1.76
UPF3P48412 YDL094CYDL094C 510 nt4.08□□□□□ -1.76
UPF3P48412 NTH1YDR001C 2256 nt4.08□□□□□ -1.76
UPF3P48412 RAD55YDR076W 1221 nt4.08□□□□□ -1.76
UPF3P48412 IZH1YDR492W 951 nt4.08□□□□□ -1.76
UPF3P48412 YGL177WYGL177W 348 nt4.08□□□□□ -1.76
UPF3P48412 GPI1YGR216C 1830 nt4.08□□□□□ -1.76
UPF3P48412 RDN5-1RDN5-1 121 nt4.08□□□□□ -1.76
UPF3P48412 RDN5-6RDN5-6 121 nt4.08□□□□□ -1.76
UPF3P48412 NKP2YLR315W 462 nt4.08□□□□□ -1.76
UPF3P48412 YNL057WYNL057W 333 nt4.08□□□□□ -1.76
UPF3P48412 DUG3YNL191W 1074 nt4.08□□□□□ -1.76
UPF3P48412 SUI1YNL244C 327 nt4.08□□□□□ -1.76
UPF3P48412 RPC34YNR003C 954 nt4.08□□□□□ -1.76
UPF3P48412 PLP2YOR281C 861 nt4.08□□□□□ -1.76
UPF3P48412 AZR1YGR224W 1842 nt4.07□□□□□ -1.76
UPF3P48412 PEP7YDR323C 1548 nt4.07□□□□□ -1.76
UPF3P48412 GYP6YJL044C 1377 nt4.07□□□□□ -1.76
UPF3P48412 MET17YLR303W 1335 nt4.07□□□□□ -1.76
UPF3P48412 ATP5YDR298C 639 nt4.07□□□□□ -1.76
UPF3P48412 RPS18AYDR450W 441 nt4.07□□□□□ -1.76
UPF3P48412 AIM23YJL131C 1071 nt4.07□□□□□ -1.76
UPF3P48412 SIL1YOL031C 1266 nt4.07□□□□□ -1.76
UPF3P48412 HNT3YOR258W 654 nt4.07□□□□□ -1.76
UPF3P48412 ICS2YBR157C 768 nt4.07□□□□□ -1.76
UPF3P48412 MRPL27YBR282W 441 nt4.07□□□□□ -1.76
UPF3P48412 GCR1YPL075W 2358 nt4.07□□□□□ -1.76
UPF3P48412 SLM2YNL047C 1971 nt4.07□□□□□ -1.76
UPF3P48412 APL4YPR029C 2499 nt4.06□□□□□ -1.76
UPF3P48412 ALG1YBR110W 1350 nt4.06□□□□□ -1.76
UPF3P48412 YIR014WYIR014W 729 nt4.06□□□□□ -1.76
UPF3P48412 RSM26YJR101W 801 nt4.06□□□□□ -1.76
UPF3P48412 RPS4AYJR145C 786 nt4.06□□□□□ -1.76
UPF3P48412 CNB1YKL190W 528 nt4.06□□□□□ -1.76
UPF3P48412 ISA1YLL027W 753 nt4.06□□□□□ -1.76
UPF3P48412 YLR163W-AYLR163W-A 114 nt4.06□□□□□ -1.76
UPF3P48412 SPN1YPR133C 1233 nt4.06□□□□□ -1.76
Retrieved 100 of 7,029 protein–RNA pairs in 17.5 ms