Protein–RNA interactions for Protein: P03905

MT-ND4, NADH-ubiquinone oxidoreductase chain 4, humanhuman

Predictions only

Length 459 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND4P03905 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
MT-ND4P03905 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
MT-ND4P03905 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
MT-ND4P03905 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC18.8■□□□□ 0.6
MT-ND4P03905 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
MT-ND4P03905 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MT-ND4P03905 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MT-ND4P03905 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
MT-ND4P03905 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC18.79■□□□□ 0.6
MT-ND4P03905 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC18.79■□□□□ 0.6
MT-ND4P03905 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC18.79■□□□□ 0.6
MT-ND4P03905 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
MT-ND4P03905 SNX5-217ENST00000606557 1087 ntBASIC18.79■□□□□ 0.6
MT-ND4P03905 AL031848.2-201ENST00000607670 837 ntBASIC18.79■□□□□ 0.6
MT-ND4P03905 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
MT-ND4P03905 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC18.79■□□□□ 0.6
MT-ND4P03905 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
MT-ND4P03905 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC18.79■□□□□ 0.6
MT-ND4P03905 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
MT-ND4P03905 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MT-ND4P03905 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MT-ND4P03905 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MT-ND4P03905 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
MT-ND4P03905 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
MT-ND4P03905 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
MT-ND4P03905 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
MT-ND4P03905 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MT-ND4P03905 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC18.78■□□□□ 0.6
MT-ND4P03905 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MT-ND4P03905 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
MT-ND4P03905 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.78■□□□□ 0.6
MT-ND4P03905 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MT-ND4P03905 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
MT-ND4P03905 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.77■□□□□ 0.6
MT-ND4P03905 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
MT-ND4P03905 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC18.77■□□□□ 0.6
MT-ND4P03905 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.6
MT-ND4P03905 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
MT-ND4P03905 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
MT-ND4P03905 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC18.77■□□□□ 0.6
MT-ND4P03905 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
MT-ND4P03905 RNF165-205ENST00000588679 2904 ntBASIC18.77■□□□□ 0.6
MT-ND4P03905 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC18.77■□□□□ 0.6
MT-ND4P03905 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
MT-ND4P03905 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
MT-ND4P03905 USF2-207ENST00000595068 1612 ntTSL 5 BASIC18.77■□□□□ 0.6
MT-ND4P03905 REST-206ENST00000612429 1376 ntTSL 5 BASIC18.77■□□□□ 0.6
MT-ND4P03905 REST-207ENST00000616975 1370 ntTSL 5 BASIC18.77■□□□□ 0.6
MT-ND4P03905 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
MT-ND4P03905 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC18.77■□□□□ 0.59
MT-ND4P03905 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
MT-ND4P03905 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC18.76■□□□□ 0.59
MT-ND4P03905 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MT-ND4P03905 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MT-ND4P03905 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
MT-ND4P03905 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MT-ND4P03905 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
MT-ND4P03905 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC18.76■□□□□ 0.59
MT-ND4P03905 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
MT-ND4P03905 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MT-ND4P03905 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
MT-ND4P03905 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC18.76■□□□□ 0.59
MT-ND4P03905 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC18.76■□□□□ 0.59
MT-ND4P03905 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
MT-ND4P03905 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.76■□□□□ 0.59
MT-ND4P03905 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
MT-ND4P03905 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MT-ND4P03905 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
MT-ND4P03905 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
MT-ND4P03905 SENP5-202ENST00000419026 973 ntTSL 3 BASIC18.75■□□□□ 0.59
MT-ND4P03905 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
MT-ND4P03905 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
MT-ND4P03905 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC18.75■□□□□ 0.59
MT-ND4P03905 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
MT-ND4P03905 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
MT-ND4P03905 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
MT-ND4P03905 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC18.75■□□□□ 0.59
MT-ND4P03905 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
MT-ND4P03905 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC18.74■□□□□ 0.59
MT-ND4P03905 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
MT-ND4P03905 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MT-ND4P03905 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
MT-ND4P03905 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
MT-ND4P03905 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MT-ND4P03905 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC18.74■□□□□ 0.59
MT-ND4P03905 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC18.74■□□□□ 0.59
MT-ND4P03905 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
MT-ND4P03905 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
MT-ND4P03905 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC18.73■□□□□ 0.59
MT-ND4P03905 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
MT-ND4P03905 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
MT-ND4P03905 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
MT-ND4P03905 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
MT-ND4P03905 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC18.73■□□□□ 0.59
MT-ND4P03905 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
MT-ND4P03905 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC18.73■□□□□ 0.59
MT-ND4P03905 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC18.73■□□□□ 0.59
MT-ND4P03905 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
MT-ND4P03905 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
MT-ND4P03905 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms